BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915018

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57730.1 | Symbols:  | RING/U-box superfamily protein | chr1...   494    9e-139
  AT1G57740.1 | Symbols:  | pseudogene, putative cytochrome P450,...  69.4    6e-11 


> AT1G57730.1 | Symbols:  | RING/U-box superfamily protein | chr1:21380858-21381382 
REVERSE LENGTH=525
Length=525

 Score =  494 bits (267),  Expect = 9e-139
 Identities = 442/524 (84%), Gaps = 21/524 (4%)
 Strand=Plus/Plus

Query  522   AGAAATCACCATCGATGTTAACGTCTTTCCGAGTCCACGCAAGTCTCCATCAAATAGAGT  581
             ||||||||| || ||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct  9     AGAAATCACTATTGATGTTAACGTCTTTCCGAGTCCACGCAAGTCTTCATCGAATACAGT  68

Query  582   GGAGAT-ATATGTCAAGCTTGAGAGAGACGACACGTGTCATGATGCCCCTCCGTTCCCAA  640
             |||||| | || |||||| |||||| ||||||| |||| ||||||| |||| ||||| ||
Sbjct  69    GGAGATCA-ATCTCAAGCGTGAGAGCGACGACAAGTGTGATGATGCTCCTCTGTTCCAAA  127

Query  641   TCACG-ATC--AT---AAACA-ACATGGTTAGCTTTGATCCACACAAGACCTCTTCTCTC  693
             ||||  | |  ||   ||| | || | |||| |||||||||||||||||||||| |||||
Sbjct  128   TCACTCAACTTATCTTAAA-AGACGTCGTTAACTTTGATCCACACAAGACCTCTCCTCTC  186

Query  694   CTCTATTCAACCTT-CCAAGAC-G-ATCTCTTACGCAGTCGTCTCTGCGTCGAGATGGCT  750
             ||| |  ||| ||| ||| ||| | |||||  | ||| |||||| ||||| |||||||||
Sbjct  187   CTCGAAACAATCTTTCCA-GACAGTATCTC--AGGCACTCGTCTTTGCGTTGAGATGGCT  243

Query  751   TTAGCATCCGAACAAGTTCCAGCGCCGTTTAACATGTACCTTCACGGCACAGTGAGATTC  810
             ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  244   TTAGCATCCGAACGAGTTCCAGCGCCGTTTGACATGTACCTTCACGTCACAGTGAGATTC  303

Query  811   ATCGGATCATCTTCTTCTAGTTCTACTCAAGACAATGAGACATGTGCTATTTGTTTGGAG  870
              ||| |  |||  ||||||||||| ||| ||| ||  ||||||| |||||||||||||||
Sbjct  304   GTCGAAGAATCCACTTCTAGTTCTCCTCTAGAAAACAAGACATGCGCTATTTGTTTGGAG  363

Query  871   GATATGTCAGAGGATGTACAAGACTTTCAAGAGATGCCGAATTGTCCCCATGTGTTTCAT  930
             ||||||||| |||||||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct  364   GATATGTCACAGGATGTACATGACTATCAGGAGATGCCGAATTGTCCCCATGTCTTTCAT  423

Query  931   GATAACTGTATCCACAAGTGGTTAATTGATAATACTCTT-TGCCCTCTCTGCCGCACTGT  989
              || |||||||| |||| |||||   | ||| || | || ||||||||||||||||||||
Sbjct  424   AATGACTGTATCTACAAATGGTTGGGTCATAGTAAT-TTGTGCCCTCTCTGCCGCACTGT  482

Query  990   TATTCTTGAAGATGACGATGACGACAACCATCCCTACTACTCCT  1033
             |   ||||||||||| ||||||||| |  |||||||||||||||
Sbjct  483   T---CTTGAAGATGAAGATGACGACGATTATCCCTACTACTCCT  523


> AT1G57740.1 | Symbols:  | pseudogene, putative cytochrome P450, 
blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092 
unnamed protein product {Oryza 
sativa (japonica cultivar-group)} | chr1:21382131-21383304 
FORWARD LENGTH=1174
Length=1174

 Score = 69.4 bits (37),  Expect = 6e-11
 Identities = 45/49 (92%), Gaps = 0/49 (0%)
 Strand=Plus/Plus

Query  421  ACTGTCAATCAAATGCTCGCGAAGATCATATCTTCAAGAAGAGAGGAGA  469
            ||||||||| |||| ||  ||||||||||||||||||||||||||||||
Sbjct  891  ACTGTCAATGAAATTCTTTCGAAGATCATATCTTCAAGAAGAGAGGAGA  939



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50887190911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5