BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915044
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13430.1 | Symbols: IIL1, ATLEUC1 | isopropyl malate isomera... 2351 0.0
> AT4G13430.1 | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase
large subunit 1 | chr4:7803933-7807871 REVERSE LENGTH=1873
Length=1873
Score = 2351 bits (1273), Expect = 0.0
Identities = 1448/1530 (95%), Gaps = 21/1530 (1%)
Strand=Plus/Plus
Query 13 TCTGTAATCTCCTCCTCTACC-TTCCTCTGCAAATCATCATCCTCCAAGAAG-GATTTAG 70
||||| ||||| |||||| || || || ||| || ||||||||||||| || ||||| |
Sbjct 89 TCTGTTATCTCTTCCTCT-CCTTTTCTATGC-AA--ATCATCCTCCAAG-AGTGATTTGG 143
Query 71 GGATTTCGTCGTTTCCTAAATCTTCACAGATTTCGATTCATCGATGTCAGAAG-AA---A 126
||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 144 GGATTTCTTCGTTTCCTAAATCTTCTCAGATTTCGATTCATCGATGTCAGAAGAAATCGA 203
Query 127 --T--C----GATTGTTTCCGTTATGGCTCCGCAGAAGGATCGGTCTCCAGGCACTACAG 178
| | ||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 204 TCTCACGGAAGATTGTTTCCGTTATGGCTCCTCAAAAGGATCGGTCTCCTGGAACTACAG 263
Query 179 GATCGGTGAAAACTGGGATGACGATGACGGAGAAGATTTTAGCTAGAGCTTCTGAGAAGT 238
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 264 GATCGGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAGAAGT 323
Query 239 CGTTAGTGGTTCCTGGTGATAACATTTGGGTTAATGTTGATGTTCTTATGACTCATGATG 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CATTAGTGGTTCCTGGTGATAACATTTGGGTTAATGTTGATGTTCTTATGACTCATGATG 383
Query 299 TTTGTGGCCCTGGTGCTTTTGGTATCTTCAAGAGAGAGTTTGGCGAAAAAGCTAAGGTTT 358
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 384 TTTGTGGTCCTGGTGCTTTTGGTATCTTCAAGAGAGAGTTTGGTGAAAAAGCCAAGGTTT 443
Query 359 GGGATCCGGAGAAGATTGTGGTGATTCCGGATCACTATATTTTCACAGCCGATAAGCGTG 418
||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 444 GGGATCCGGAGAAGATTGTTGTGATTCCGGATCATTATATTTTCACTGCTGATAAGCGTG 503
Query 419 CGAACCGGAATGTTGACATCATGCGGGAGCATTGCAGGGAGCAGAACATTAAGTACTTT- 477
| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||
Sbjct 504 CAAACCGGAATGTTGACATCATGAGGGAGCATTGCAGGGAACAGAATATTAAGTA-TTTC 562
Query 478 TACGATATCACTGACCTTGGAAATTTTAAGGCTAATCCTGACTACAAAGGTGTTTGCCAT 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TATGATATCACTGACCTTGGAAATTTTAAGGCTAATCCTGACTACAAAGGTGTTTGCCAT 622
Query 538 GTCGCACTTGCACAAGAAGGTCATTGCAGGCCAGGAGAGGTTTTGTTAGGAACAGACTCT 597
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GTTGCACTTGCACAAGAAGGTCATTGCAGGCCAGGAGAGGTTTTGTTAGGAACAGACTCA 682
Query 598 CACACTTGTACTGCTGGAGCATTTGGTCAATTTGCTACAGGGATTGGAAACACTGATGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CACACTTGTACTGCTGGAGCATTTGGTCAATTTGCTACAGGGATTGGAAACACTGATGCA 742
Query 658 GGCTTTGTGTTAGGCACTGGAAAAATCCTCCTTAAGGTTCCACCAACAATGAGGTTTATC 717
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 743 GGTTTTGTGTTAGGCACTGGAAAAATCCTCCTTAAGGTTCCACCAACGATGAGGTTTATC 802
Query 718 TTGGATGGTGAAATGCCCAGTTATTTGCAAGCAAAGGATCTGATTTTGCAAATCATTGGT 777
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 803 TTGGATGGTGAGATGCCTAGTTATTTGCAAGCAAAGGATCTGATTTTACAAATTATTGGT 862
Query 778 GAAATATCTGTTGCTGGTGCAACTTACAAGACGATGGAGTTCAGTGGTACAACTATCGAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GAAATATCTGTTGCTGGTGCAACTTACAAGACGATGGAGTTCAGTGGTACAACTATCGAA 922
Query 838 AGTTTGAGTATGGAAGAAAGAATGACATTGTGCAGCATGGTTGTGGAAGCTGGGGGAAAG 897
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 923 AGTCTGAGTATGGAAGAAAGAATGACATTGTGCAACATGGTTGTGGAAGCTGGGGGAAAG 982
Query 898 AATGGTGTCATCCCTCCTGATGCGACGACAATAAATTATGTTGAGAATAGGACATCTGTG 957
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 983 AATGGTGTCATCCCTCCTGATGCGACGACATTAAATTATGTTGAGAATAGGACATCTGTA 1042
Query 958 CCATTTGAGCCAGTTTATAGTGATGGAAATGCAAGCTTTGTCGCAGATTATAGATTTGAC 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CCATTTGAGCCAGTATATAGTGATGGAAATGCAAGCTTTGTCGCAGATTATAGATTTGAC 1102
Query 1018 GTGTCAAAGCTGGAGCCTGTGGTGGCTAAGCCTCATTCTCCTGACAACCGGGCTCTAGCA 1077
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1103 GTGTCAAAGCTGGAGCCTGTGGTGGCTAAGCCTCATTCTCCTGACAACCGAGCTCTAGCT 1162
Query 1078 AGAGAATGCAAAGATGTGAAAATTGACAGAGTATACATTGGTTCTTGTACTGGTGGGAAG 1137
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1163 AGAGAATGCAAAGACGTGAAAATTGACAGAGTATACATCGGTTCTTGTACTGGTGGGAAG 1222
Query 1138 ACAGAGGACTTTATGGCTGCAGCTAAACTTTTCCACGCAGCAGGAAGAAAGGTCAAAGTC 1197
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 ACAGAGGATTTTATGGCTGCAGCTAAACTTTTCCACGCAGCAGGAAGAAAGGTCAAAGTT 1282
Query 1198 CCAACTTTCCTTGTCCCTGCTACTCAGAAGGTGTGGATGGATGTGTACGCTCTCCCGGTG 1257
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1283 CCAACTTTCCTTGTCCCGGCTACTCAGAAGGTGTGGATGGATGTGTATGCTCTCCCGGTA 1342
Query 1258 CCTGGATCAGGTGGAAAGACATGTGCGCAGATCTTTGAAGAAGCTGGCTGTGACACTCCA 1317
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1343 CCTGGAGCAGGTGGAAAGACATGTGCGCAGATCTTTGAAGAAGCTGGCTGTGACACACCA 1402
Query 1318 GCCAGTCCTAGCTGTGGTGCTTGCCTTGGTGGCCCAGCAGACACCTATGCTCGCTTGAAT 1377
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1403 GCCAGCCCTAGCTGTGGTGCTTGCCTTGGTGGCCCAGCAGACACCTACGCTCGCTTGAAT 1462
Query 1378 GAACCTCAAGTGTGTGTCTCAACGACGAACAGGAACTTCCCCGGTCGGATGGGACACAAA 1437
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1463 GAACCTCAAGTGTGTGTCTCAACGACAAACAGGAACTTCCCCGGTCGGATGGGACACAAA 1522
Query 1438 GAAGGGCAGATTTACTTAGCTTCTCCATACACCGCTGCAGCCTCTGCTTTAACCGGTCAT 1497
|||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||| | |
Sbjct 1523 GAAGGGCAAATTTACTTAGCGTCTCCTTACACTGCTGCAGCCTCGGCTTTAACCGGCCGT 1582
Query 1498 GTCGCTGACCCAAGGGAGTTCTTGCAGTAG 1527
||||||||||||||||||||||||||||||
Sbjct 1583 GTCGCTGACCCAAGGGAGTTCTTGCAGTAG 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5