BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915045
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transpor... 3618 0.0
> AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transporter
5 | chr4:7796850-7802251 REVERSE LENGTH=2623
Length=2623
Score = 3618 bits (1959), Expect = 0.0
Identities = 2228/2361 (94%), Gaps = 6/2361 (0%)
Strand=Plus/Plus
Query 1 ATGGATGGTGAGGAACAGCAAATAGATGGTGATGAAGTTAATAACCATGAGAACAAGTTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGGATGGTGAGGAACATCAAATAGATGGTGATGAAGTTAATAACCATGAGAACAAGTTG 137
Query 61 AATGaaaaaaaGAAATCATGGGGAAAACTATATCGACCCGACTCTTTCAGCATAGAGGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 138 AATGAAAAAAAGAAATCATGGGGAAAACTATATCGACCCGACTCTTTCATCATAGAGGCC 197
Query 121 GGACAAACTCCAACAAATACCGGGCGTCCCTCATTGATGAGCTGGACAACGACGATGAGT 180
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 198 GGACAAACTCCAACAAATACCGGGCGTCGCTCATTGATGAGCTGGAGAACAACGATGAGT 257
Query 181 TTGGCATTTCAGAGCCTAGGAGTGGTGTATGGAGACATCGGGACATCACCGTTGTATGTG 240
||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 258 TTGGCATTTCAGAGCCTAGGAGTGGTGTATGGAGATATCGGGACATCGCCATTATATGTG 317
Query 241 TATGCAAGTACTTTCACTGAAGGCATCAATGACAAAAATGATGTCATTGGTGTTCTCTCG 300
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 318 TATGCAAGTACTTTCACTGATGGCATCAATGACAAAGATGATGTCGTTGGTGTTCTCTCG 377
Query 301 CTCATCATCTACACGATTACTCTCGTCGCACTCCTCAAATACGTTTTCATTGTTCTTCAG 360
||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 378 CTCATAATCTACACTATTACTCTCGTAGCGCTCCTCAAATACGTTTTCATTGTTCTTCAG 437
Query 361 GCTAACGATAATGGTGAAGGAGGAACATTTGCTTTGTACTCGCTGATATGTCGGTATGCG 420
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 438 GCTAACGATAACGGTGAAGGAGGAACATTTGCATTGTACTCACTGATATGTCGGTATGCG 497
Query 421 AAAATGGGACTAATTCCAAACCAAGAACCAGAAGATACAGAACTCTCCAACTATACTCTT 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 498 AAAATGGGACTAATTCCAAACCAAGAACCAGAAGATGTAGAACTCTCCAACTATACACTT 557
Query 481 GAACTTCCAACCACACAGCTCAAAAGAGCCCATATGATCAAAGAGAAGCTCGAGAGTTCT 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 558 GAACTTCCAACCACACAGCTCAGAAGAGCCCATATGATCAAAGAGAAGCTCGAGAACTCT 617
Query 541 AAATTCGCTAAGATTATACTCTTCCTCGTCACTATTATGGGAACTTCCATGGTCATTGGT 600
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 618 AAATTCGCTAAGATCATTCTCTTCCTAGTCACTATTATGGGAACTTCCATGGTCATTGGT 677
Query 601 GATGGCATCCTTACTCCTTCCATTTCAGTACTTTCAGCAGTAAGTGGAATCAAATCTCTC 660
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 678 GATGGAATCCTTACTCCTTCCATCTCAGTACTTTCAGCAGTAAGTGGAATCAAATCTCTC 737
Query 661 GGCCAAGACACAGTTGTGGGTGTTTCGGTTGCAATCTTGATTGTTCTATTCGCATTTCAG 720
|||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GGCCAAAACACGGTGGTGGGTGTTTCGGTTGCAATCTTGATTGTTCTATTCGCATTTCAG 797
Query 721 CAGTTCGGAACCGATAAAGTCGGATTCTCATTCGCTCCGATCATCCTCGTATGGTTCACA 780
| ||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 798 CGGTTTGGCACCGATAAAGTTGGATTCTCATTCGCCCCGATCATCCTCGTATGGTTCACA 857
Query 781 TTTCTGATCGGAATCGGTCTTTTTAATCTGTTCAAGCATGACATTACCGTCTTAAAGGCA 840
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 TTTCTGATCGGAATTGGTCTCTTTAATCTGTTCAAGCATGACATTACCGTCTTAAAGGCA 917
Query 841 CTTAATCCACTCTATATCATTTACTACTTTAGAAGAACTGGTCGAAAAGGTTGGATTTCC 900
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 918 CTTAATCCACTCTATATCATTTACTACTTTAGAAGAACTGGTAGACAGGGTTGGATTTCC 977
Query 901 CTCGGAGGTGTTTTCCTTTGCATCACTGGAACGGAGGCCATGTTTGCTGATCTAGGTCAT 960
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 978 CTCGGAGGTGTTTTCCTCTGCATCACTGGGACGGAGGCAATGTTTGCTGATCTAGGTCAC 1037
Query 961 TTTAGTGTTCGAGCCGTACAGATTAGTTTCTCATGTGTCGCATATCCGGCGTTAGTAACA 1020
|| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1038 TTCAGTGTTCGAGCTGTACAGATTAGTTTCTCATGTGTCGCATATCCTGCTTTAGTAACG 1097
Query 1021 ATATATTGCGGGCAGGCTGCGTACCTTACTAAACATACTTCCAATGTGTCCAATACTTTC 1080
|||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 1098 ATATATTGCGGGCAGGCTGCGTACCTAACTAAACATACTTACAATGTGTCAAATACTTTC 1157
Query 1081 TACGACTCAATCCCTGATCCGTTATACTGGCCAACATTTGTTGTGGCGGTGGCAGCATCG 1140
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1158 TACGACTCAATCCCTGATCCGTTATACTGGCCAACATTTGTGGTAGCGGTGGCAGCATCA 1217
Query 1141 ATCATCGCGAGCCAAGCTATGATATCGGGAGCCTTTTCAGTCATCTCGCAATCTCTACGT 1200
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1218 ATCATCGCGAGCCAAGCTATGATATCGGGCGCCTTTTCAGTCATCTCGCAATCTCTACGT 1277
Query 1201 ATGGGTTGTTTCCCTCGAGTGAAAGTGGTTCACACCTCGGCTAAGTACGAGGGACAAGTC 1260
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1278 ATGGGTTGTTTCCCTCGAGTGAAGGTGGTTCACACCTCGGCTAAGTACGAGGGACAAGTC 1337
Query 1261 TATATCCCGGAGATCAACTACTTACTCATGCTTGCATGCATCGCTGTTACCGTCG-CTTT 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||| | | ||||
Sbjct 1338 TATATCCCGGAGATCAACTACTTGCTCATGCTTGCATGCATCGCTGTTACCCTTGCCTTT 1397
Query 1320 CAGAACCACTGAGAAGATTGGCCACGCTTATGGGATCGCCGTTGTAACCGTCATGGTCAT 1379
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1398 -AGAACTACTGAGAAGATTGGTCACGCTTATGGGATCGCCGTTGTAACCGTCATGGTCAT 1456
Query 1380 CACAACCTCAATGGTGACTCTCATAATGTTGGTTATCTGGAAGACGAACATAGTGTGGAT 1439
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1457 CACAACCTTAATGGTGACTCTCATAATGTTGGTTATCTGGAAGACCAATATAGTGTGGAT 1516
Query 1440 TGTTATCTTCTTAATCGTCTTTGGCTCCATAGAGATGTTATACCTATCGTCGGTCATGTA 1499
|| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1517 TGCTATCTTCTTGGTCGTCTTTGGCTCCATAGAGATGTTATACCTATCTTCGGTCATGTA 1576
Query 1500 CAAGTTTACAAGCGGTGGGTATTTACCACTTACGGTAACGGTCGTTTTGATGGCGATGAT 1559
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1577 CAAGTTTACAAGCGGTGGGTATTTACCACTTACGATAACGGTCGTTTTGATGGCGATGAT 1636
Query 1560 GGCGATTTGGCAATATGTTCATGTCCTCAAGTACAGGTACGAGCTGAAGGAGAAAATTTC 1619
|||||||||||||||||||||||||||||| ||| |||||||||||| |||||| || ||
Sbjct 1637 GGCGATTTGGCAATATGTTCATGTCCTCAAATACCGGTACGAGCTGAGGGAGAAGATCTC 1696
Query 1620 TCGTGAAAATGCTATACAAATGGCTACAAGTCCTGACGTAAACCGGGTTCCAGGGATTGG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TCGTGAAAATGCTATACAAATGGCTACAAGTCCTGACGTAAACCGGGTTCCAGGGATTGG 1756
Query 1680 TCTTTTCTACACGGAGCTTGTTAACGGTATAACTCCATTGTTCTCTCATTATATTTCGAA 1739
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1757 TCTTTTCTACACGGAGCTTGTTAACGGTATAACTCCATTGTTCTCTCACTATATATCAAA 1816
Query 1740 TCTTTCGTCGGTCCACTCGGTTTTTGTCTTGCTATCGATCAAGACACTTCCCGTGAATCG 1799
||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||
Sbjct 1817 TCTTTCGTCCGTCCACTCGGTGTTTGTATTGATATCGATCAAGACACTTCCCGTGAACCG 1876
Query 1800 GGTGACATCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCAAAAAGATTCAGGAATGTT 1859
||||| |||||||||||||||||||||||||||||||||| ||| ||||| || |||||
Sbjct 1877 AGTGACGTCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCCAAAGGATTCCGGGATGTT 1936
Query 1860 TAGGTGTGTTGTGAGGTATGGTTACAAAGAAGACATTGAGGAGCCTGATGAGTTTGAGCG 1919
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1937 TAGGTGTGTTGTGAGATATGGTTACAAGGAAGACATTGAGGAGCCTGATGAGTTCGAGCG 1996
Query 1920 TCATTTTGTTCATTACCTAAAGGAATTCATTCATCACGAGCACTTCATGTCCGAAGGAGG 1979
|||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1997 TCATTTTGTTTATTACTTAAAGGAATTCATTCATCACGAGCACTTCATGTCTGGAGGAGG 2056
Query 1980 AGGAGACGTGGACGAGACTGACAAAGAAGATGAACCAAATG-TGGAGACAACACTTGTGC 2038
||| || ||||||||||| ||||||||||| |||||||||| || |||||||| ||||||
Sbjct 2057 AGGGGAGGTGGACGAGACGGACAAAGAAGAGGAACCAAATGCTG-AGACAACAGTTGTGC 2115
Query 2039 CTTCGTCTAACTCTGTCCCTTCATCGGGGCGGATCGGATCCGCGCATTCATCTTCGTCGG 2098
|||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 2116 CTTCGTCTAATTATGTCCCTTCATCGGGGCGGATCGGGTCCGCCCATTCATCTTCGTCAG 2175
Query 2099 ACAAGATTAGGTCAGGAATGGTCGTACATGTGCAATCTGTTGAGGATCAAACGGAGTTGG 2158
||||||||||||| |||| |||||| || || ||||| || ||||||||||| |||||||
Sbjct 2176 ACAAGATTAGGTCGGGAAGGGTCGTGCAGGTTCAATCCGTGGAGGATCAAACAGAGTTGG 2235
Query 2159 TGGAGAAGGCAAGAGAGAAAGGAATGGTTTATCTAATGGGAGAGACGGAAATTACCGCGG 2218
||||||| || ||||||||||| ||||||||||||||||||||||| || ||||| || |
Sbjct 2236 TGGAGAAAGCGAGAGAGAAAGGGATGGTTTATCTAATGGGAGAGACCGAGATTACGGCAG 2295
Query 2219 CA-AAAGATTCTTCTTTGTTTAAGAAGTTTATAGTGAACCATGCTTACAATTTCTTGAAG 2277
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 -AGAAAGAGTCTTCTTTGTTTAAGAAGTTTATAGTGAACCATGCTTACAATTTCTTGAAG 2354
Query 2278 AAGAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCTAGGTCAAAGCTTCTCAAGGTT 2337
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2355 AAGAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCTAGGTCGAAGCTTCTCAAGGTT 2414
Query 2338 GGCATGACTTATGAGTTATAA 2358
|||||||| ||||||||||||
Sbjct 2415 GGCATGACCTATGAGTTATAA 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5