BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915047
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transpor... 3280 0.0
> AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transporter
5 | chr4:7796850-7802251 REVERSE LENGTH=2623
Length=2623
Score = 3280 bits (1776), Expect = 0.0
Identities = 2170/2363 (92%), Gaps = 16/2363 (1%)
Strand=Plus/Plus
Query 1 ATGGATGGTGAGGAACCTCAAATAGAT-G-G-TGAAGCTAATAACCATGAGAACAAGTTG 57
|||||||||||||||| |||||||||| | | ||||| ||||||||||||||||||||||
Sbjct 78 ATGGATGGTGAGGAACATCAAATAGATGGTGATGAAGTTAATAACCATGAGAACAAGTTG 137
Query 58 AATGGAAAAAAGAAATCATGGGGAAAACTATTTCGGCCTGATTCTTTTACCATAGAGGCC 117
|||| |||||||||||||||||||||||||| ||| || || ||||| | ||||||||||
Sbjct 138 AATGAAAAAAAGAAATCATGGGGAAAACTATATCGACCCGACTCTTTCATCATAGAGGCC 197
Query 118 GGACAAACTCCAATC-AATACCGGGCGTC-CTTCATTGATGAGCTGGAGAACGACAATAA 175
||||||||||||| | ||||||||||||| | |||||||||||||||||||| || || |
Sbjct 198 GGACAAACTCCAA-CAAATACCGGGCGTCGC-TCATTGATGAGCTGGAGAACAACGATGA 255
Query 176 GTTTGGCATTTCAGAGCCTAGGAGTTGTGTATGGAGACATCGGGACATCGCCGTTGTATG 235
||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||
Sbjct 256 GTTTGGCATTTCAGAGCCTAGGAGTGGTGTATGGAGATATCGGGACATCGCCATTATATG 315
Query 236 TATACGCAAGTACTTTCACTCAAGGCATCAATGACAAAGATGATGTTATTGGCGTTCTCT 295
| || ||||||||||||||| | ||||||||||||||||||||||| |||| |||||||
Sbjct 316 TGTATGCAAGTACTTTCACTGATGGCATCAATGACAAAGATGATGTCGTTGGTGTTCTCT 375
Query 296 CGCTCATTATCTACACTATTACTCTTGTCGCACTCGTCAAATATGTCTTCATTGTTCTTC 355
||||||| ||||||||||||||||| || || ||| ||||||| || |||||||||||||
Sbjct 376 CGCTCATAATCTACACTATTACTCTCGTAGCGCTCCTCAAATACGTTTTCATTGTTCTTC 435
Query 356 AGGCTAACGACAACGGTGAAGGAGGAACATTTGCATTGTACTCATTGATATGTCGGTATG 415
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 AGGCTAACGATAACGGTGAAGGAGGAACATTTGCATTGTACTCACTGATATGTCGGTATG 495
Query 416 CAAAAATGGGATTAATCCCAAACCAAGAACCAGAAGACAG-AGAGCTCTCAAACTATGCA 474
| ||||||||| |||| |||||||||||||||||||| | ||| ||||| |||||| ||
Sbjct 496 CGAAAATGGGACTAATTCCAAACCAAGAACCAGAAGA-TGTAGAACTCTCCAACTATACA 554
Query 475 CTTGAACTTCCAACCACACAGCTTAGAAGAGCTCAAATGATCAAAGAGAAGCTCGAGAAC 534
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 555 CTTGAACTTCCAACCACACAGCTCAGAAGAGCCCATATGATCAAAGAGAAGCTCGAGAAC 614
Query 535 TCCAAATTCGCTAAGATTATACTCTTCCTTGTCACTATTATGGGTACTTCCATGGTCATT 594
|| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 615 TCTAAATTCGCTAAGATCATTCTCTTCCTAGTCACTATTATGGGAACTTCCATGGTCATT 674
Query 595 GGCGATGGAATCCTTACTCCTTCCATATCAGTACTTTCAGCAGTAAGTGGCATCAAATCT 654
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 675 GGTGATGGAATCCTTACTCCTTCCATCTCAGTACTTTCAGCAGTAAGTGGAATCAAATCT 734
Query 655 CTTGGCCAAGACACGGTGGTGGGTGTTTCGGTTGCAATCTTGATTGTTCTATTCGCATTT 714
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTCGGCCAAAACACGGTGGTGGGTGTTTCGGTTGCAATCTTGATTGTTCTATTCGCATTT 794
Query 715 CAACGGTTTGGAACCGATAAAGTTGGATTCTCATTCGCTCCAATCATCCTCGTATGGTTC 774
|| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 795 CAGCGGTTTGGCACCGATAAAGTTGGATTCTCATTCGCCCCGATCATCCTCGTATGGTTC 854
Query 775 ACATTCCTGATCGGAATCGGTCTCTTTAATCTGTTCAAGCATGACATTACCGTCTTAAAG 834
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 ACATTTCTGATCGGAATTGGTCTCTTTAATCTGTTCAAGCATGACATTACCGTCTTAAAG 914
Query 835 GCACTTAATCCACTCTACATTATTTACTACTTTAGAAGAGCTGGTAGGGATGGTTGGATT 894
||||||||||||||||| || |||||||||||||||||| ||||||| | |||||||||
Sbjct 915 GCACTTAATCCACTCTATATCATTTACTACTTTAGAAGAACTGGTAGACAGGGTTGGATT 974
Query 895 TCCCTCGGAGGTGTTTTCCTCTGCATCACTGGGACGGAAGCCATGTTTGCTGATCTAGGT 954
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 975 TCCCTCGGAGGTGTTTTCCTCTGCATCACTGGGACGGAGGCAATGTTTGCTGATCTAGGT 1034
Query 955 CATTTCAGTGTTCGAGCTGTACAGATTAGTTTCTCATGTGTGGCATATCCGGCTCTAGTA 1014
|| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 1035 CACTTCAGTGTTCGAGCTGTACAGATTAGTTTCTCATGTGTCGCATATCCTGCTTTAGTA 1094
Query 1015 ACAATATATTGCGGGCAGGCTGCGTACCTTACTAAACATACTT-CGAACGTTTCAAATAC 1073
|| |||||||||||||||||||||||||| ||||||||||||| | || || ||||||||
Sbjct 1095 ACGATATATTGCGGGCAGGCTGCGTACCTAACTAAACATACTTAC-AATGTGTCAAATAC 1153
Query 1074 TTTCTACGACTCAATCCCAGATCCAATATACTGGCCAACATTTGTGGTGGCGGTGGCAGC 1133
|||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1154 TTTCTACGACTCAATCCCTGATCCGTTATACTGGCCAACATTTGTGGTAGCGGTGGCAGC 1213
Query 1134 ATCAAACATCGCGAGCCAAGCTATGATATCAGGAGCCTTCTCAATCATCTCGCAGTCTCT 1193
||||| |||||||||||||||||||||||| || ||||| ||| |||||||||| |||||
Sbjct 1214 ATCAATCATCGCGAGCCAAGCTATGATATCGGGCGCCTTTTCAGTCATCTCGCAATCTCT 1273
Query 1194 ACGTATGGGTTGTTTCCCACGAGTGAAAGTGGTTCATACCTCGGCTAAGTACGAGGGACA 1253
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 1274 ACGTATGGGTTGTTTCCCTCGAGTGAAGGTGGTTCACACCTCGGCTAAGTACGAGGGACA 1333
Query 1254 AGTCTACATCCCCGAGATCAACTACTTGCTCATGCTTGCTTGCATTGCTGTTACCCTTGC 1313
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1334 AGTCTATATCCCGGAGATCAACTACTTGCTCATGCTTGCATGCATCGCTGTTACCCTTGC 1393
Query 1314 CTTCAGAACCACTGAGAAGATTGGTCATGCTTATGGGATCGCTGTCGTAACGGTTATGGT 1373
||| ||||| ||||||||||||||||| |||||||||||||| || ||||| || |||||
Sbjct 1394 CTTTAGAACTACTGAGAAGATTGGTCACGCTTATGGGATCGCCGTTGTAACCGTCATGGT 1453
Query 1374 TATCACTACCTTTATGGTAACTCTCATAATGCTGTTTATCTGGAAGACCAATATAGTGTG 1433
||||| ||||| ||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 1454 CATCACAACCTTAATGGTGACTCTCATAATGTTGGTTATCTGGAAGACCAATATAGTGTG 1513
Query 1434 GATCGCGATGTTCTTGATAGTATTTGGCTCCATAGAGATGTTGTACTTATCGTCGGTCAT 1493
||| || || |||||| | || |||||||||||||||||||| ||| |||| ||||||||
Sbjct 1514 GATTGCTATCTTCTTGGTCGTCTTTGGCTCCATAGAGATGTTATACCTATCTTCGGTCAT 1573
Query 1494 GTACAAGTTCACAAATGGTGGGTATCTACCGCT-AGCGATAACGGTCTTTTTGATGGCGA 1552
||||||||| |||| ||||||||| |||| || | ||||||||||| ||||||||||||
Sbjct 1574 GTACAAGTTTACAAGCGGTGGGTATTTACCACTTA-CGATAACGGTCGTTTTGATGGCGA 1632
Query 1553 TGATGGCGATCTGGCAATATGTTCACGTTCTCAAGTACCAGTACGAGCTGAGGGAGAAGA 1612
|||||||||| |||||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 1633 TGATGGCGATTTGGCAATATGTTCATGTCCTCAAATACCGGTACGAGCTGAGGGAGAAGA 1692
Query 1613 TTTCTCCTGAAAACGCTATACACATGGCTACAAGTCCTGACATAAACCGGGTTCCAGGGA 1672
| |||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1693 TCTCTCGTGAAAATGCTATACAAATGGCTACAAGTCCTGACGTAAACCGGGTTCCAGGGA 1752
Query 1673 TTGGTCTGTTCTACACGGAGCTTGTTCACGGTATAACTCCATTGTTCTCTCATTATATCT 1732
||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1753 TTGGTCTTTTCTACACGGAGCTTGTTAACGGTATAACTCCATTGTTCTCTCACTATATAT 1812
Query 1733 CGAATCTTACGTCAGTCCACTCGGTTTTTGTCTTGATATCGATCAAGACACTTCCCGTGA 1792
| |||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1813 CAAATCTTTCGTCCGTCCACTCGGTGTTTGTATTGATATCGATCAAGACACTTCCCGTGA 1872
Query 1793 ACCGAGTGACATCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCCAAAGGATTCCGGAA 1852
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1873 ACCGAGTGACGTCATCAGAGCGGTTCTTTTTCCGTTACGTGGGGCCAAAGGATTCCGGGA 1932
Query 1853 TGTTTAGGTGTGTTGTGAGGTATGGTTACAAGGAAGACATTGAAGAGCCTGATGAGTTTG 1912
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 1933 TGTTTAGGTGTGTTGTGAGATATGGTTACAAGGAAGACATTGAGGAGCCTGATGAGTTCG 1992
Query 1913 AGCGTCAGTTTGTTCATTCCTTAAAGGAATTCATCCATCACGAGCACTTCATGTCCACAG 1972
||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 1993 AGCGTCATTTTGTTTATTACTTAAAGGAATTCATTCATCACGAGCACTTCATGTCTGGAG 2052
Query 1973 GAGGAG---ATGTGGACGAGACGGAGAAAGAAGAGGAATCAAATGCTGAGACAACACTTG 2029
|||||| | |||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 2053 GAGGAGGGGAGGTGGACGAGACGGACAAAGAAGAGGAACCAAATGCTGAGACAACAGTTG 2112
Query 2030 TTCCTTCGTCTAATTCTGTTCCTTCATCGGGGCGGATCGGGTCCGCGCATTCATCTTTGT 2089
| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 2113 TGCCTTCGTCTAATTATGTCCCTTCATCGGGGCGGATCGGGTCCGCCCATTCATCTTCGT 2172
Query 2090 CGGACAAGATTAGGTCGGGAAGGGTCGTGCAGGTGCAATCTGTGGAGGATCAAACGGAGT 2149
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 2173 CAGACAAGATTAGGTCGGGAAGGGTCGTGCAGGTTCAATCCGTGGAGGATCAAACAGAGT 2232
Query 2150 TGTTGGATAAAGCGAGAGAGAGAGGAATTGTTTATCTAATGGGAGAGACGGAGATAACGG 2209
|| |||| ||||||||||||| ||| || |||||||||||||||||||| ||||| ||||
Sbjct 2233 TGGTGGAGAAAGCGAGAGAGAAAGGGATGGTTTATCTAATGGGAGAGACCGAGATTACGG 2292
Query 2210 CAAAGAAAGAGTCTTCTTTGTTTAAAAAGTTTATAGTGAACCATGCTTACAATTTCTTGA 2269
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2293 CAGAGAAAGAGTCTTCTTTGTTTAAGAAGTTTATAGTGAACCATGCTTACAATTTCTTGA 2352
Query 2270 AGAAAAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCCAGGTCAAAGCTTCTTAAGG 2329
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 2353 AGAAGAATTGTCGGGAAGGAGACAAAGCACTTGCGATTCCTAGGTCGAAGCTTCTCAAGG 2412
Query 2330 TTGGCATGACTTATGAGTTATAA 2352
|||||||||| ||||||||||||
Sbjct 2413 TTGGCATGACCTATGAGTTATAA 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116766467670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5