BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915048
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13410.1 | Symbols: ATCSLA15, CSLA15 | Nucleotide-diphospho-... 1441 0.0
AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-li... 795 0.0
> AT4G13410.1 | Symbols: ATCSLA15, CSLA15 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr4:7792219-7795824
REVERSE LENGTH=1614
Length=1614
Score = 1441 bits (780), Expect = 0.0
Identities = 912/976 (93%), Gaps = 8/976 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTGCTTTTGAAGCCTCTCCTTTCTCTACAAGATTTATCTCTTAACCTCATCTCG 60
|||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGTTTTTGCTTCTGAAGCCTCTCCTTTCTCTACACGATTTATCTCTTAACCTCCTCTCG 60
Query 61 GTAATGTTCCATGGAGAAATTCTTAAAGCATCCGTGGATAGTGTGGGGATAAGCATGGA- 119
||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct 61 GTAATGTTCCATGGAGAAACTCTTAAAGCATCCGTGGATGGTGTGGGGATAAACAT-GAG 119
Query 120 CACTATGTGGAGAGAAACAAGGAGTGTACTCATAGTTCCAGTGTTCAAGTGTGTGGTGGC 179
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | ||||
Sbjct 120 CACTATGTGGAGAGAAACAAGGAATGTATTCATAGTTCCATTGTTCAAGTGTATAGTGGT 179
Query 180 TATGTGTTTGGTCATATCATTATTGA-TTTTCATGGAGAGTGTTTACATGAACCTTGTAG 238
|||||||||| |||| || | || | ||||| | |||||||||||||||||||||||||
Sbjct 180 TATGTGTTTGATCATCTCGCTCTT-AGTTTTCGTTGAGAGTGTTTACATGAACCTTGTAG 238
Query 239 TACTCTACGTCAAGTTGTTTAACCGAAAACCTGAGAAGGTCTATAAATGGGAGGCAATGC 298
||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 239 TACTCTATGTCAAGTTGTTTAACCGAAAACCAGAGAAAGTCTACAAATGGGAGGCAATGC 298
Query 299 AGGAAGATATGGAGCTTGGTCATCAAAACTATCCGATGGTCCTTGTCCAAATTCCAATGT 358
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 299 AGGAGGATATGGAGCTTGGTCATCAAAATTATCCGATGGTCCTTGTTCAAATCCCAATGT 358
Query 359 ACAACGAACGAGAGGTCTTCGAATTATCTATAGGTGCTGCGTGCAGACTAACGTGGCCAT 418
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 359 ACAACGAACGAGAGGTCTTTGAATTATCTATAGGTGCTGCGTGCAGACTAACATGGCCAT 418
Query 419 CGGACCGCCTAATCGTTCAAGTTTTAGATGATTCTACCGATCCAGCCATCATGGAACTGG 478
||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 419 CGGACCGTCTAATTGTTCAAGTTTTAGATGATTCCACCGATCCAGCAATCATGGAACTGG 478
Query 479 TGAGCATGGAATGTGCAAAATGGGCATCAAAAGGCATAAACATAAAGTATGAGAGGCGAG 538
|||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct 479 TGAGCATGGAATGTACAAAATGGGCATCAAAAGACATAAATATAAATTATGAGAGGCGAG 538
Query 539 ACAACAGAAATGGCTACAAGGCTGGAGCTCTTAAGCACGGCATGAGGCACAGCTACGTCA 598
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AGAACAGAAATGGCTACAAGGCTGGAGCTCTTAAGCACGGCATGAGGCACAGTTACGTCA 598
Query 599 AGCACTG-CAACTAT-TTGGCCATCTTTGATGCTGATTTCCAGTCCGAGTCAGACTACCT 656
|||| || ||| ||| || |||||||||||||||||||||||| ||||| | || |||||
Sbjct 599 AGCAGTGCCAA-TATCTT-GCCATCTTTGATGCTGATTTCCAGCCCGAGCCCGATTACCT 656
Query 657 CCAACGCGCTATCCCCTTTCTTATCCACAACCCTGAGGTCGCTCTAGTTCAAGCTCGATG 716
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 657 CCAACGCGCTATCCCCTTTCTTATCCACAACCCTGAGGTCGCTCTTGTCCAAGCTCGATG 716
Query 717 GAGATTTGTGAACGCGAACACATGCTTAATGACGAGGATCCAAGAGATGTCTCTCAACTA 776
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 717 GAGATTTGTAAACGCTAACACATGCTTAATGACGAGGATGCAAGAGATGTCTCTGAACTA 776
Query 777 CCATTTCATGGCAGAGCAACAATCTGGATCCACACGACATGATTTCTTTGGCTTTAATGG 836
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 777 CCATTTCATGGCAGAGCAACAATCTGGATCCACAAGACATGCTTTCTTTGGCTTTAATGG 836
Query 837 AACTGCGGGAGTGTGGAGAATGGCGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGAC 896
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 AACTGCGGGAGTATGGAGAATGGTGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGAC 896
Query 897 GACGGTGGAGGACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GACGGTAGAGGACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT 956
Query 957 CGTCAATGACCTCGAG 972
||||||||||||||||
Sbjct 957 CGTCAATGACCTCGAG 972
Score = 898 bits (486), Expect = 0.0
Identities = 561/597 (94%), Gaps = 6/597 (1%)
Strand=Plus/Plus
Query 976 CATCGGTGGTCATGTGGTCCAGCCAATCTT-TTCCGGAAAATGATGATGGAAATTATTCA 1034
||||||||||| |||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 1021 CATCGGTGGTCTTGTGGTCCAGCCAATCTTATT-AGGAAAATGACGATGGAAATTATTCA 1079
Query 1035 CAATAAGAGAGTGAAGATTTGGAAGAAGTTTTACGTGATCTACAGCttttttttCCTACG 1094
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 CAATAAGAGAGTGAAGATTTGGAAGAAGTTTTACGTGATCTACAGCTTCTTTTTCCTACG 1139
Query 1095 GAAGATCATAGTCCACTTCTTCACTT-TCTTCTTCTATTGTGTCGTCCTTCCTACAAGTG 1153
||||||| |||||||||||||||||| | ||||| || |||||| | |||||||||||||
Sbjct 1140 GAAGATCGTAGTCCACTTCTTCACTTAT-TTCTTTTACTGTGTCATTCTTCCTACAAGTG 1198
Query 1154 TCTTCCTTCCCGAAGTCAAA-ATTCCGAACTGGTCGACTATATACGTTCCTTCTATCATC 1212
|||||||||||||||| ||| || ||||||||||| |||||||| ||||||||| |||||
Sbjct 1199 TCTTCCTTCCCGAAGT-AAATATACCGAACTGGTCAACTATATATGTTCCTTCTGTCATC 1257
Query 1213 ACCCTCTTCAGTGCCATCGCCACTCCAAGATCATTCTACCTCGTGGGTTTTTGGGTCTTA 1272
|||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1258 ACCCTCTTGAGTGCCATTGCCACTCCAAGATCATTCTACCTCGTGATTTTTTGGGTCTTA 1317
Query 1273 TTCGAAAATGTAATGGATATGCATCGGACCAAAGGAACTTTGATTGGCTTATTTGAAGGA 1332
|||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1318 TTCGAAAATGTAATGGCTATGCACCGGACCAAGGGAACTTTGATTGGCTTATTTGAAGGA 1377
Query 1333 GGAAGAGTCAATGAATGGGTTGTCACAGAGAAATTAGGAGATACTCTTAACACTAAGCTA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GGAAGAGTCAATGAATGGGTTGTCACAGAGAAATTAGGAGATACTCTTAACACTAAGCTA 1437
Query 1393 CTTCCCCGGAATGGGCGACTTCTGAAAAGAGTAAATTTGAAGGAGATGATGATGGGTATA 1452
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTTCCCCAGAATGGACGACTTCCGAAAAGAGTAAATTTGAAGGAGATGATGATGGGTATA 1497
Query 1453 TACATATTATGTTGTGCCTGCTACGACTTTGCCTTTGGGAACACATTTTTATATTTATAT 1512
||||||||||||||||| |||||||||||||| ||||| || ||||||||||||| |||
Sbjct 1498 TACATATTATGTTGTGCTTGCTACGACTTTGCATTTGGAAATGCATTTTTATATTTGTAT 1557
Query 1513 CTCTTCATGCAAGCCACTGCTTTTCTCATCTCCGGAATTGGCTTTGTTGGAACTTAA 1569
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1558 CTCTTCATGCAAGCCACTGCTTTTCTCATCTCCGGAGTTGGCTTTGTTGGAACTTAA 1614
> AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-like
A10 | chr1:8516238-8519734 REVERSE LENGTH=1858
Length=1858
Score = 795 bits (430), Expect = 0.0
Identities = 750/903 (83%), Gaps = 27/903 (3%)
Strand=Plus/Plus
Query 82 CTT-AAAGCATCCGTGGATAGTGTGGGGATAAGCATGGACACTATGTGG--A-GAGAAAC 137
||| ||| ||||| | || ||| | |||||||| | ||||| | ||| | |||||
Sbjct 112 CTTGAAA-CATCCATAAATGGTGCGAGGATAAGCTTCGACACGACATGGACACGAGAATT 170
Query 138 AAGGAG-TGTACTCATAGTTCCAGTGTTCAAGTGTGTGGTGGCTATGTGTTTGGTCATAT 196
||||| | || | |||||||| | ||||||||| |||||||| | |||||| | || |
Sbjct 171 TAGGAGCT-TATTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTTTTTGTTTGATAATCT 229
Query 197 CATTATTGA-TTTTCATGGAGAGTGTTTACATGAACCTTGTAGTACTCTACGTCAAGTTG 255
| | || | ||||||| ||| || | |||||||||||||||||||||||||||||| ||
Sbjct 230 CCCTCTT-AGTTTTCATAGAGGGTATATACATGAACCTTGTAGTACTCTACGTCAAGGTG 288
Query 256 TTTAACCGAAAACCTGAGAAGGTCTATAAATGGGAGGCAATGCAGGAAGATATGGAGCTT 315
||| | |||||||| || || || |||| ||||||||| ||||| || || || ||||||
Sbjct 289 TTTGAGCGAAAACCCGAAAAAGTTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCTT 348
Query 316 GGTCATCAAAACTATCCGATGGTCCTTGTCCAAATTCCAATGTACAACGAACGAGAGGTC 375
|| ||| ||| ||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 349 GGACATGAAACCTACCCCATGGTCCTTGTCCAAATTCCAATGTACAACGAAAAAGAGGTC 408
Query 376 -TTCGAATTATCTATAGGTGCTGCGTGCAGACTAACGTGGCCATCGGACCGCCTAATCGT 434
||| ||||||||||||||||||| || ||||||| ||||||| |||||||||||| ||
Sbjct 409 CTTC-AATTATCTATAGGTGCTGCATGTAGACTAATATGGCCATTGGACCGCCTAATTGT 467
Query 435 TCAAGTTTTAGATGATTCTACCGATCCAGCCATCATGGAACTGGTGAGCATGGAATGTGC 494
|||||||||||||||||| || |||| | |||||| ||| ||||||| || || |||||
Sbjct 468 TCAAGTTTTAGATGATTCCACTGATCAAACCATCAAGGAGCTGGTGAACACAGAGTGTGC 527
Query 495 AAAATGGGCAT-CAAAAGGCATAAACATAAAGTATGAGAGGCGAGACAACAGAAATGGCT 553
|||||||| | |||| || |||| ||||||| ||||||| ||||||||||||||||||
Sbjct 528 AAAATGGGAAAGCAAA-GGTGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCT 586
Query 554 ACAAGGCTGGAGCTCTTAA-GCACGGCATGAGGCACAGCTACGTCAAGC-ACTGCAACTA 611
|||| || ||||||||||| | | ||||||| ||||| |||||| |||| | ||||| ||
Sbjct 587 ACAAAGCCGGAGCTCTTAAAGAA-GGCATGAAGCACAACTACGTGAAGCTA-TGCAATTA 644
Query 612 TTTGGCCATCTTTGATGCTGATTTCCAGTCCG-AGTCAGACTACCTCCAACGCGCTATCC 670
| | | |||||| || || || ||||| ||| || | || |||||||||| | || |||
Sbjct 645 TGTCGTCATCTTCGACGCAGACTTCCAA-CCGGAGCCTGATTACCTCCAACACTCTGTCC 703
Query 671 CCTTTCTTATCCACAACCCTGAGGTCGCTCTAGTTCAAGCTCGATGGAGATTTGTGAACG 730
|||| || | || ||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 704 CCTTCCTCGTTCATAACCCCGAGGTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACG 763
Query 731 CGAACACA-TGCTTAATGACGAGGATCCAAGAGATGTCTCTCAACTACCA-TTTCATGGC 788
| |||| | ||||| ||||||||||| ||||||||||| ||||||||||| ||| |||||
Sbjct 764 CAAACA-AGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTT-ATGGC 821
Query 789 AGAGCAACAATCTGGATCCAC-ACGACATGATTTCTTTGGCTTTAATGGAACTGCGGGAG 847
||||||| ||||||||||||| | |||||| |||||| |||| |||||||||||||| |
Sbjct 822 AGAGCAAGAATCTGGATCCACTA-GACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTG 880
Query 848 TGTGGAGAATGGCGGCGATGGAAGAAGCTGGAGGATGGAAGGACCGGACGACGGTGGAGG 907
| ||||||||||| |||||||||||||||||||||||| | |||||||| || || ||||
Sbjct 881 TATGGAGAATGGCCGCGATGGAAGAAGCTGGAGGATGGCATGACCGGACTACTGTAGAGG 940
Query 908 ACATGGACTTGGCCGTTCGTGTTGGTCTTCTCGGTTGGAAATTTATCTT-CGTCAATGAC 966
||||||||||||||||||||| |||||||||||| ||||||||| |||| | ||||||||
Sbjct 941 ACATGGACTTGGCCGTTCGTGCTGGTCTTCTCGGCTGGAAATTTGTCTTTC-TCAATGAC 999
Query 967 CTC 969
|||
Sbjct 1000 CTC 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5