BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915049
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13400.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1443 0.0
> AT4G13400.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:7787691-7791284
REVERSE LENGTH=1340
Length=1340
Score = 1443 bits (781), Expect = 0.0
Identities = 847/880 (96%), Gaps = 0/880 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTCTCGCCGGAATCCACCGTTCCTACGGTTTCCACCGTCACCATATCCTACCCA 60
|||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 136 ATGTCTCTCTCGTCGGACTCCACCGTTCCTACTGTTTCCACGGTCACCATATCCTACTCA 195
Query 61 GAGCTCAAGGAGAGCAACATAGATTTGTCTGCGAGGATTGAAGAAGGATTTGGACCTAAT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 196 GAGCTCAAGGAGAGCAACATAGATTTGTCTGCAAGGATTGAAGAAGGATTTGGACCTAAT 255
Query 121 GGACTTGGAATTCTCTCTGTTAAAGATGTTCCTGGATATTCTGCTTTACGACAGAATCTA 180
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 256 GGACTTGGAATCCTCTCTGTTAAAGATGTTCCTGGATATTCTGCTTTAAGACAGAATCTA 315
Query 181 CTTCGGCTTGCACCTAGGTTAGCTGGCCTTCCTGAAGAGGTGAAGAGAGAGCTTGAAGAT 240
|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 316 CTTCAGCTTGCACCTAGGTTAGCTGGTCTTCCTGAAGAGGTGAAGAGGGAGCTTGAAGAT 375
Query 241 GCTCATAGTAGGTATAACTTTGGTTGGAGTCATGGCAAGGAGAAACTTGAATCCGGGAAG 300
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CCTCATAGTAGGTATAATTTTGGTTGGAGTCATGGCAAGGAGAAACTTGAATCCGGGAAG 435
Query 301 CTTGATATGTTGAAGGGTTCTTACTATGCTAATCCTCTACAAGATGTACCGACGAGTAAT 360
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 436 CTTGACATGCTGAAGGGTTCTTACTATGCTAATCCTCTACAAGATGTACCTACGAGTAAT 495
Query 361 TCATATGAAATACAGCGGTATCCATCATATTGTGGATCAAACATATGGCCAAAGAATTCT 420
|||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 496 TCATATGAAATACAGCGGTATCCATCGTATTGTGGATCAAATATATGGCCAAGGAATTCT 555
Query 421 TTACCGGAACTTGAAGGAGGTTTCAAAGCTCTTGGTAAACTGATGTTCGAAGTTGGGCTG 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTACCGGAACTTGAAGGAGCTTTCAAAGCTCTTGGTAAACTGATGTTCGAAGTTGGGCTA 615
Query 481 ATGGTAGCTTACCACTGTGATCAATATGTGTCGAAGGGTATAAAACAACATGAAAAGCAA 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 616 ATGGTAGCTTACCACTGTGATCAATATGTGTCAAAGGGTATAAAACAACATGAAAAGCAA 675
Query 541 AATCTTGAAAAGATACTACGTGACTCTCGGTGTCACAAAGGACGTCTGCTTTATTATTTT 600
||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 676 AATCTTGAAAAGATACTACTTGGCTCTCGGTGTCACAAAGGACGGCTGCTTTATTATTTC 735
Query 601 CCTGCTCAGGATAGCTCTACGCATGACAACGATTCCATCTCATCTTGGTGTGGATGGCAT 660
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CCTGCACAAGAGAGCTCTACGCATGACAACGATTCCATCTCATCTTGGTGTGGATGGCAT 795
Query 661 ACAGACCATGGTTCACTCACAGGTCTTACTCGTGCAATATTTTCTAGAGATTCAGTTGAA 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 796 ACAGACCATGGTTCACTCACAGGTCTTACTCGAGCAATATTTTCTAGAGATTCAGTTGAA 855
Query 721 GTACCTTGCCCAGATCCTGCTTCTGGCTTATACATACAAACACGATCAGGTCAGATCGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GTACCTTGCCCAGATCCTGCTTCTGGCTTATACATACAAACACGATCAGGTCAGATCGTT 915
Query 781 AAGGTTGTGTATGGGGAAGATGAAATAGCATACCAAATCGGCGAGACAACAGCAATTCTG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 916 AAGGTTGTGTATGGGGAAGATGAAATAGCATACCAAATAGGCGAGACAACATCAATTCTG 975
Query 841 TCAAGTGGTTATCTTTGTGCTACACCTCATTGTGTTCGGG 880
|| |||||||||||||||||||||||||||||||||||||
Sbjct 976 TCTAGTGGTTATCTTTGTGCTACACCTCATTGTGTTCGGG 1015
Score = 305 bits (165), Expect = 5e-82
Identities = 183/192 (95%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 925 CCACAAGGAGAGGAGGCTCGTGGTCTAGAGCGATCGACATTCGCATTGTTCATGCAACCT 984
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 CCACAAGGAGAAGAGGCGCGTGGTCTAGAGCGATCGACATTCGCGTTGTTCATGCAACCT 1077
Query 985 GATTGGGATCAGAAGCTTACATTCCCAAAAGAAGTGACAATACATGAAGAGTTATCTCTC 1044
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1078 GACTGGGACCAGAAGCTTACATTCCCAAAAGAAGTTACAATACATGAAGAGTTATGTCTC 1137
Query 1045 TCTGATGAAGTCTTGACGTTTGGAGAATATACAGAGAAACTGCTCAACAAATACTACGAT 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 TCTGATGAAGTCTTGACGTTTGGAGAATATACAGAGAAACTGCTCAACAAATACTATGAT 1197
Query 1105 TCAAAACCTTAG 1116
|||||||||||
Sbjct 1198 ACAAAACCTTAG 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5