BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915066
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotrans... 411 2e-114
> AT2G22250.2 | Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase
| chr2:9457810-9460412 REVERSE LENGTH=1744
Length=1744
Score = 411 bits (222), Expect = 2e-114
Identities = 238/246 (97%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 1 AGTTTGCTTGAAGAGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTAGTGCTTTCG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 869 AGTTTGCTCGAAGAGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCG 928
Query 61 GGTGAAATATGTGAACACATTATTTATGCACCGGCAACACACACAAGCTTTGCTTCTTTG 120
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 929 GATGAAATATATGAACACATTATTTATGCACCTGCAACACACACAAGCTTTGCTTCTTTG 988
Query 121 CCAGACATGTATGAAAGAACTTTGACAATAAACGGTTTCTCAAAGGCTTTCGCAATGACG 180
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 989 CCTGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACG 1048
Query 181 GGTTGGAGGCTTGGTTATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTA 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTA 1108
Query 241 CAAGGC 246
||||||
Sbjct 1109 CAAGGC 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5