BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915085
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28... 387 6e-107
> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394
REVERSE LENGTH=1347
Length=1347
Score = 387 bits (209), Expect = 6e-107
Identities = 239/254 (94%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 163 GAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCAAAACAGATGTG 222
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 343 GAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTG 402
Query 223 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAG 282
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 403 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAG 462
Query 283 ATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAA 342
|||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 463 ATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAA 522
Query 343 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGCTGTAGGTGAATAC 402
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 523 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATAC 582
Query 403 ATCGATGACATATA 416
|| ||||||||||
Sbjct 583 ATTAATGACATATA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5