BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915087

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47940.1 | Symbols:  | DNAJ heat shock family protein | chr3...   342    1e-93


> AT3G47940.1 | Symbols:  | DNAJ heat shock family protein | chr3:17687956-17689549 
REVERSE LENGTH=1476
Length=1476

 Score =  342 bits (185),  Expect = 1e-93
 Identities = 269/307 (88%), Gaps = 16/307 (5%)
 Strand=Plus/Plus

Query  7    GTGGGAGAGGACACAGAACGTTTAGGAATGGTCATTTCAACACCAGTGGTGGTAATTAAT  66
            ||||||||||| ||||| ||||||||||||||||||||||||||      ||        
Sbjct  575  GTGGGAGAGGAAACAGAGCGTTTAGGAATGGTCATTTCAACACC------GG--------  620

Query  67   TACGGTGCGAATGGTTATAGCGGTGAGATGAGGAAAGCTCCAGCTGTGGAGAATCCATTG  126
            |  ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct  621  T--GGTGCCAATGGTTATAGCGGTGAGATGAGGAAAGTTCCAGCTATGGAGAATCCATTG  678

Query  127  CCTGTGAGTTTGGAGGATCTGTATAACGGTGTGAAGAAGAAGATGCGTTTATCGAGAAAT  186
            |||||||||||||||||||||||||| ||||||  ||||||||||||  || | ||||||
Sbjct  679  CCTGTGAGTTTGGAGGATCTGTATAAAGGTGTGGTGAAGAAGATGCGGATAACTAGAAAT  738

Query  187  GTCTACGATGCTTCTGGGAAAATGATGGTAGAGGAGGAGATATTACCTATAGATATAAAA  246
            ||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||
Sbjct  739  GTCTATGATGCTTCTGGGAGAATGATGGTAGAGGCGGAGATATTGCCTATAGAAATAAAA  798

Query  247  CCTGGTTTGAAGAAAGGTACAAAGCTCACATTCCCTAAGAAAGGCAATGAAAAGCCTGGA  306
            ||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||
Sbjct  799  CCTGGTTGGAAGAAAGGAACAAAGCTGACATTTCCTAAGAAAGGCAATGAAGAGCCTGGA  858

Query  307  ATCATAC  313
            |||||||
Sbjct  859  ATCATAC  865



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5