BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915088

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28...   398    2e-110


> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394 
REVERSE LENGTH=1347
Length=1347

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 241/254 (95%), Gaps = 0/254 (0%)
 Strand=Plus/Plus

Query  94   GAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCAAAACAGATGTG  153
            |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct  343  GAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTG  402

Query  154  GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAG  213
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  403  GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAG  462

Query  214  ATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAA  273
            ||||||  ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  463  ATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAA  522

Query  274  GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTAGCTGTAGTTGAATAC  333
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  523  GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATAC  582

Query  334  ATCGATGACATATA  347
            ||  ||||||||||
Sbjct  583  ATTAATGACATATA  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5