BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915101
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 843 0.0
> AT4G13220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to
27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:7674288-7675313 REVERSE LENGTH=712
Length=712
Score = 843 bits (456), Expect = 0.0
Identities = 497/517 (96%), Gaps = 2/517 (0%)
Strand=Plus/Plus
Query 25 TCTTTGAATCCTTCGCCTCTTGCTCCAAGCTTCTTACAAACCCTAACCCAATTCTCAAAT 84
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 54 TCTTTGAATCCTTCGCCTCTCGCTCCAAGATTCTTACAAACCCTAACCCAATTCCCCAAT 113
Query 85 TCTCCGTTCCTCTCTCCATGCTCGGTTTTGAAGTTAAAAAACGCATCTTTGCTGAATTTG 144
||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 114 TCTCCATTCCTCTCTCCATGCTCTGTTTTGAAGTTAAAAAACGCATCTTTACTCAACTTG 173
Query 145 AGAACTCGAATTGCTCCTCTTCAATCC-CAACGAGTTCGGTCCAAAACCCTTGTTTTGTC 203
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 174 AGAACTCGAATTGCTCCTCTTCAA-CCACAACGACTTCGGTCCAAAACCCTTGTTTTGTC 232
Query 204 TGCTCAGTCCAGTTTCTTGAAAGTTCTTAGAACCGCGTGGAATATTGGGAAAGATGGAAT 263
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 233 TGCTCAGTCCAGTTTCTTGAAAGTTCTTAGAACTGCGTGGAATATTGGGAAAGATGGAAT 292
Query 264 CGAAGCTGGAACCAATCTTGTACCTGTTTCTGTGCCTAGACCAGTAGCTAGAATCTCGGT 323
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 293 TGAAGCTGGAACCAATCTTGTACCTGTTTCTGTGCCTAGACCAGTAGCGAGAATCTCTGT 352
Query 324 GACAATTGCAGCATTGGCGGTTTCGTTGTTTGTTGTCAAGTCGTTTCTATCAACCGCTTT 383
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 353 GACAATTGCAGCATTGGCGGTTTCGTTGTTTGTTGTCAAGTCGTTTCTATCGACAGCTTT 412
Query 384 CTTTGTATTGGGTACAATGGGATTTGCATATTTCTTATTCATAGCCTTAAACAAAGATGA 443
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 413 CTTTGTATTGGGTACAATGGGATTTGCATATTTCTTATTCATAGCTTTAAACAAAGATGA 472
Query 444 AGCTCCTAAACTAAGAGGAGATGATAATAGCTCTGGTTCTAAGCCAATGGATGATCCACT 503
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 AGCTCCTAAACTAAGAGGAGATGATAATAGCTCTGGTTCTAAGTCAATGGATGATCCACT 532
Query 504 TGAAGAAGCAAAGAAAATCATGGACAAGTACAAGTAA 540
|||||||||||||||||||||||||||||||||||||
Sbjct 533 TGAAGAAGCAAAGAAAATCATGGACAAGTACAAGTAA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25870585705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5