BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915106

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27350.1 | Symbols:  | Protein of unknown function (DUF1223)...   444    3e-124


> AT4G27350.1 | Symbols:  | Protein of unknown function (DUF1223) 
| chr4:13690821-13692796 REVERSE LENGTH=1170
Length=1170

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 277/294 (94%), Gaps = 5/294 (2%)
 Strand=Plus/Plus

Query  18   AAGA-CCGTATGGATCGAGCCAATGGACGGTGAGGCAAAAGGCGTATGTAGAGGCGTTGA  76
            |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct  468  AAGATCCGTATGGATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATATAGAGGCGTTGA  527

Query  77   ATCTGGATACGATGTTTACTCCGCAGCTTGTAG-TTCAAGGCT-GTTCTCAATTGATCGG  134
            ||||||||||||||||||||||||||||||| | | ||||| | ||||||||||||||||
Sbjct  528  ATCTGGATACGATGTTTACTCCGCAGCTTGT-GATCCAAGG-TCGTTCTCAATTGATCGG  585

Query  135  AAACGAGGAAGAGACGCTGTTAAAATCAATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGC  194
            |||||| || ||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct  586  AAACGAAGAGGAGACGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCCTTCTCCAGC  645

Query  195  TTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGC  254
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  646  CTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACTCACCGGAGC  705

Query  255  TTTGAGAATGAAAGTAGATGGAAACGGAATGGACATAATGGTGGCGATATACGA  308
            |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct  706  TTTGAGAATGAAAGTAGACGGAGACGGAATGGACATAATGGTGGCAATATACGA  759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5