BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915111
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13170.1 | Symbols: | Ribosomal protein L13 family protein ... 983 0.0
AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein ... 608 2e-173
> AT4G13170.1 | Symbols: | Ribosomal protein L13 family protein
| chr4:7654944-7656594 REVERSE LENGTH=862
Length=862
Score = 983 bits (532), Expect = 0.0
Identities = 591/620 (95%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTGGGTCAGGAATATGCGCTAAGCGCGTGGTCGTAGACGGGCGACACCACATG 60
||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 53 ATGGTGTCTGGGTCAGGGATATGCGCGAAGCGCGTTGTCGTCGACGGGCGACACCACATG 112
Query 61 CTTGGTCGTCTGGCTTCC-ACAACTGCAAAGGAGTTACTCAACGGACAGAAAGTGGTGGT 119
||||||||||| |||||| || ||||| ||||||||||| ||||||||| ||||||| ||
Sbjct 113 CTTGGTCGTCTAGCTTCCAAC-ACTGCGAAGGAGTTACTTAACGGACAGGAAGTGGTTGT 171
Query 120 TGTCCGATGTGAAGAGATTTGTCTCTCAGGAGGTTTGGTTCGACAAAAGATGAAGTACAT 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 172 TGTCCGATGTGAAGAGATTTGTCTCTCGGGAGGTTTGGTTCGACAAAAGATGAAGTACAT 231
Query 180 GAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTTCGTGC 291
Query 240 TCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGCGTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGCGTGG 351
Query 300 TGCTGCTGCACTTGCTCGCTTGAAGGTTTTCGAGGGAATCCCACCTCCATATGATAAGAT 359
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 352 TGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTACGACAAGAT 411
Query 360 TAAGAGAATGGTTATCCCTGATGCTCTTAAGGTTTTGAGACTTCAGAGTGGCCACAAGTA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 412 TAAGAGAATGGTTATTCCTGATGCTCTTAAGGTTTTGAGACTTCAGAGTGGTCACAAGTA 471
Query 420 CTGCTTATTGGGACGTCTATCGTCTGAGGTTGGCTGGAACCATTACGATACCATTAAAGA 479
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 472 CTGCTTATTGGGACGTTTATCTTCTGAGGTTGGCTGGAACCATTATGATACCATTAAAGA 531
Query 480 ACTTGAGACAAAGAGAAAGGAAAAATCGCAAGTGGTGTATGAGCGTAAGAAGCAACTCAA 539
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 532 ACTTGAGACAAAGAGAAAGGAAAGATCACAAGTGATGTATGAGCGTAAGAAGCAACTCAA 591
Query 540 CAAGCTCAGGGCCAAGGCAGAAAAGGTTGCGGAAGAGAAGCTCGGATCACAGCTCGATGT 599
|||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 592 CAAGCTCAGGACCAAGGCAGAGAAGGTTGCGGAAGAGAGGCTCGGATCACAGCTAGATGT 651
Query 600 TCTTGCCCCGGTTAAGTATT 619
|||||||||||| |||||||
Sbjct 652 TCTTGCCCCGGTCAAGTATT 671
> AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein
| chr3:9064532-9066089 FORWARD LENGTH=920
Length=920
Score = 608 bits (329), Expect = 2e-173
Identities = 521/613 (85%), Gaps = 16/613 (3%)
Strand=Plus/Plus
Query 1 ATGGTGTCTGGGTCAGGAATATGCGCTAAGCGCGTGGTCGTAGACGGGCGACACCACATG 60
||||||||||||||||| ||||| | ||||| || || || |||| || ||||| |||
Sbjct 82 ATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCATATG 141
Query 61 CT-TGGTCGTCTGGCTTCCA-CAACT-GC-AAAGGAGTTACTCAACGGACAGAAAGTGGT 116
| ||||||||| ||||| | | | | || ||| ||||| ||||| ||||||| || ||
Sbjct 142 -TGTGGTCGTCTTGCTTCGATC-A-TAGCTAAA-GAGTTGCTCAATGGACAGAGTGTTGT 197
Query 117 GGTTGTCCGATGTGAAGAGATTTGTCTCTCAGGAGGTTTGGTTCGACAAAAGATGAAGTA 176
|||||||||||||| ||||||||| | || || ||||||||||| || |||||||||||
Sbjct 198 TGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGAAGTA 257
Query 177 CATGAGATTCCTTAGGAAACGTATGAACACTAAGCCTTCTCATGGTCCTATTCACTTT-C 235
|||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||| |
Sbjct 258 CATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCA-TTTCC 316
Query 236 GTGCTCCTTCCAAGATCTTCTGGCGCACTGTTCGCGGGATGATTCCACACAAGACCAAGC 295
||||||| || |||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 317 GTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAGC 376
Query 296 GTGGTGCTGCTGCACTTGCTCGCTTGAAGGT-TTTCGAGGGAATCCCACCTCCATATGAT 354
||||||||||||| ||||| || |||||||| ||| |||||| | |||||||| |||||
Sbjct 377 GTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTT-GAGGGAGTACCACCTCCTTATGAC 435
Query 355 AAGATTAAGAGAATGGTTATCCCTGATGCTCTTAAGGTTTTGAGACTTCAGAG-TGGCCA 413
||| | ||||||||||| || ||||||||||| ||||| ||||| |||||| | ||| ||
Sbjct 436 AAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG-GCTGGTCA 494
Query 414 CAAGTACTGCTTATTGGGACGTCTATCGTCTGAGGTTGGCTGGAACCATTACGATACCAT 473
|||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||||
Sbjct 495 CAAGTACTGCTTGTTGGGACGTTTGTCTTCTGAAGTTGGCTGGAACCATTACGATACCAT 554
Query 474 TAAAGAACTTGAGACAAAGAGAAAGGAAAAATCGCAAG-TGGTGTATGAGCGTAAGAAGC 532
|| || |||||| ||||||||||| | || |||| | ||||||||||||||||||
Sbjct 555 CAAGGAGCTTGAGGTGAAGAGAAAGGAGAGGTCACAAGCTT-TGTATGAGCGTAAGAAGC 613
Query 533 AACTCAACAAGCTCAGGGCCAAGGCAGAAAAGGTTGCGGAAGAGAAGCTCGGATCACAGC 592
|||||| |||||||||||| ||||| || |||||||| || ||||| || ||||| ||||
Sbjct 614 AACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATCCCAGC 673
Query 593 TCGATGTTCTTGC 605
|||||||||||||
Sbjct 674 TCGATGTTCTTGC 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5