BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915127
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/h... 976 0.0
> AT4G13090.1 | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase
2 | chr4:7631535-7632870 REVERSE LENGTH=879
Length=879
Score = 976 bits (528), Expect = 0.0
Identities = 640/691 (93%), Gaps = 19/691 (3%)
Strand=Plus/Plus
Query 32 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CAGGTTCTGGCTTTGAGTCTAAAAGCCACTACGGATCAGGATTCTTCCAAATGAGAATCA 244
Query 92 AATTGCCTCCAAGAGATTCCGCGGGCGTTGTCACAGCTTTCTACTTGACTTCGAAGGGAA 151
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 245 AATTGCCTCCAAGAGATTCCGCCGGTGTTGTCACAGCTTTCTACTTGACTTCTAAGGGAG 304
Query 152 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCAACAGCAA 211
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 305 ACACCCACGATGAGGTTGACTTTGAGTTCTTGGGGAATAGACAAGGAAAACCGATAGCAA 364
Query 212 TTCAAACAAATGTGTTTACCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCTTTGGT 271
||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 365 TTCAAACAAATGTATTTAGCAATGGACAAGGAGGTAGAGAACAAAAGTTTGTTCCTTGGT 424
Query 272 TCGATCCCACTACAAGTTTCCACACTTAT-GG--TC-----AA-AC-T-T---A-TGGGG 316
||||||||||||||||||||||||||||| || || || | | | | || |
Sbjct 425 TCGATCCCACTACAAGTTTCCACACTTATGGGATTCTTTGGAATCCGTATCAGATTGTGT 484
Query 317 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATAACAAAAGAAGTGGCGTGAACT 376
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 485 TTTACGTGGACAAAGTTCCAATAAGAGTATTCAAGAATATCAAAAAAAGTGGTGTGAACT 544
Query 377 ATCCATCAAAGCCCATGCAACTTGAGACTAGTTTGTGGAACGGTGAG-GCGTGGGCAACA 435
|||||||||||||||||||||||| | |||||||||||||||||||| | |||||||||
Sbjct 545 ATCCATCAAAGCCCATGCAACTTGTGGCTAGTTTGTGGAACGGTGAGAAC-TGGGCAACA 603
Query 436 AACGGTGGTAAGGACAAGATTAATTGGGCCTATGCTCCTTTTAAGGCCCAATTCCAAGGC 495
| ||||||||| || ||||| ||||||||||||||||| |||||||| |||| |||||||
Sbjct 604 AGCGGTGGTAAAGAAAAGATAAATTGGGCCTATGCTCCATTTAAGGCTCAATACCAAGGC 663
Query 496 TTCTCCGACTATGGTTGTCACGTAAATGGTCAGAGCAATATTGCGAACGTTTGTGGTTCG 555
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 664 TTCTCCGACCATGGTTGTCACGTAAATGGTCAGAGCAATAATGCGAACGTTTGTGGTTCG 723
Query 556 ACAAAGTACTGGTGGAACACAAGGACGTATAGT-AGGTTAAGTGCAAATGAACAGAAGGC 614
|||| ||||||||||||||||||||| |||||| | ||||||||||||||| |||||||
Sbjct 724 ACAAGGTACTGGTGGAACACAAGGACATATAGTCA-GTTAAGTGCAAATGAGCAGAAGGT 782
Query 615 AATGGAGAATGTGAGAGCAAAGTACATGAACTATGATTATTGTTCTGATCGGCCTAGATA 674
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 783 AATGGAGAATGTGAGAGCAAAGTACATGACCTATGATTATTGTTCTGATCGGCCTAGATA 842
Query 675 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 705
|||||||||||||||||||||||||||||||
Sbjct 843 TCCTGTTCCTCCTAGTGAATGTCGATGGAAT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5