BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915129
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13080.1 | Symbols: XTH1 | xyloglucan endotransglucosylase/h... 1321 0.0
> AT4G13080.1 | Symbols: XTH1 | xyloglucan endotransglucosylase/hydrolase
1 | chr4:7626612-7628367 REVERSE LENGTH=879
Length=879
Score = 1321 bits (715), Expect = 0.0
Identities = 831/886 (94%), Gaps = 11/886 (1%)
Strand=Plus/Plus
Query 10 ATGGATTATATTTCAATCTTCGGTTTTGTATCAGTTTTGTATTTGATCATTAGGGTTGAT 69
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATATCTTTCAATCTTCGGTTTTGTTTCAGTTTTGTATTTGATCATTAGGGTTGAT 60
Query 70 GCTAGGGCTCATGAAGTTCAA-GGAATCGACCAAAACAAAGTAGGTTTCGATGATAATTA 128
||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 GCTAGGGCTTATGAAGTT-AATGGAATCGACCAAAGCAAAGTAGGTTTCGATGATAACTA 119
Query 129 TGTCGTTACGTGGGGACAAAATAATATCTTGAAACTTAACCAAGGGAAAGAAGTTCAGCT 188
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 CGTCGTTACGTGGGGACAAAATAATGTCTTGAAACTTAACCAAGGGAAAGAAGTTCAGCT 179
Query 189 TTCATTGGATCGTTCTTCAGGTTCTGGTTTTGAATCTAAGAATCATTACGAATCAGGATT 248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCATTGGATCATTCTTCAGGTTCTGGTTTTGAATCTAAGAATCATTACGAATCAGGATT 239
Query 249 CTTCCAAATAAGAATCAAAGTGCCTCCAAAAGATTCCTCAGGCATTGTCACCGCTTTCTA 308
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 240 CTTCCAAATAAGAATCAAAGTGCCTCCAAAAGATACCTCAGGCGTTGTCACCGCTTTCTA 299
Query 309 TTTGACTTCGAAGGAAAACACCCATGATGAACTTGACATTGAATTCTTGGGAAACAAAGA 368
|||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct 300 TTTGACTTCGAAGGGAAACACACATGATGAAGTTGATTTTGAATTCTTGGGAAACAAAGA 359
Query 369 AGGGAAACCAATAAG-AGTGCAAACAAATGTGTTTACTAATGGTAAAGG-AGATAGAGAA 426
|||||||| || | ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 360 AGGGAAAC---TA-GCAGTGCAAACAAATGTGTTTACTAATGGTAAAGGCA-ATAGAGAA 414
Query 427 CAGAAGCTAGTTCTCTGGTTCGATCCTACCAAAGATTTCCACACTTACGCAATTCTGTGG 486
|||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 415 CAGAAGTTAGCTCTCTGGTTCGATCCTTCTAAAGATTTCCACACTTACGCAATTCTGTGG 474
Query 487 AACCCGTATCAAATTGTGTTTTATGTGGACAACATTCCAATACGGGTGTTCAAGAACACC 546
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 AACCCGTATCAAATTGTGCTTTATGTGGACAACATTCCAGTACGGGTGTTCAAGAACACC 534
Query 547 ACAAGCGAAGGCATGAACTACCCAGCAAAACCTATGCAAGTGGTGGTTAGCTTGTGGAAC 606
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 535 ACAAGCCAAGGCATGAACTACCCATCAAAACCTATGCAAGTTGTGGTTAGCTTGTGGAAC 594
Query 607 GGTGAAGACTGGGCGACGGATGGTGGTAAAAGCAAGATTAATTGGGCTTTTGCTCCATTT 666
|||||| |||||||||| || |||||||||||||||||||||||| |||| ||||| |||
Sbjct 595 GGTGAAAACTGGGCGACAGACGGTGGTAAAAGCAAGATTAATTGGTCTTTGGCTCCCTTT 654
Query 667 AAGGCCAATTTTCAAGGCTTTAATAACTCTGGATGCTTCGCGAATGGTGAGAAA-AATGC 725
||||| ||||||||||||||||| |||||||| || ||| | |||| ||| ||| |||||
Sbjct 655 AAGGCTAATTTTCAAGGCTTTAACAACTCTGGTTGTTTCACCAATGCTGA-AAAGAATGC 713
Query 726 TTGTGGTTCGTCAGCGTACTGGTGGAATACCGGAAGTTATAGTAAGTTAAGTGACTCCGA 785
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 714 TTGTGGTTCGTCAGCGTACTGGTGGAATACTGGGAGTTATAGTAAGCTAAGTGACTCCGA 773
Query 786 ACAGAAAGCCTACACAAATGTGAGACAAAAGTACATGAACTATGATTATTGTTCTGATAA 845
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 774 ACAGAAAGCCTACACAAATGTGAGACAAAAGTACATGAATTATGATTATTGTTCTGATAA 833
Query 846 GGGTAGATTCCGTGTTCCTCCAAGTGAATGTAAATGGAACAACTGA 891
|| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 GGTTAGATTCCATGTTCCTCCAAGTGAATGTAAATGGAACAACTGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5