BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915133
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 261 2e-69
AT3G44130.1 | Symbols: | F-box and associated interaction doma... 169 1e-41
AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 169 1e-41
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 261 bits (141), Expect = 2e-69
Identities = 171/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1 CAGCTGAGACCTCTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CAGCTGAGACCTCTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGT 218
Query 61 TGGTCAGAAGGG-ATACAAAAGTTATACCTGCAGAATACGGACCTAAAGCAGGAACGAAG 119
|||||| ||||| ||||||||||| || |||| | || ||||||||||||||||||||
Sbjct 219 TGGTCACAAGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAA 278
Query 120 AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAA-CCGGATA 178
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
Sbjct 279 AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCT-AAATCCGGGCA 337
Query 179 GATTG 183
|||||
Sbjct 338 GATTG 342
> AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942
Score = 169 bits (91), Expect = 1e-41
Identities = 106/113 (94%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 71 GGATACAAAAGTTATACCTGCAGAATACGGACCTAAAGCAGGAACGAAGAAGAACGAAAA 130
||||||||||||| || ||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 798 GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA 857
Query 131 TGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAACCGGATAGATTG 183
|||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 858 TGCTGAGAAGGCTTGTTT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTG 909
> AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ribosomal protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453
Score = 169 bits (91), Expect = 1e-41
Identities = 107/114 (94%), Gaps = 3/114 (3%)
Strand=Plus/Plus
Query 71 GGATACAAAAGTTATACCTGCAG-AATACGGACCTAAAGCAGGAACGAAGAAGAACGAAA 129
||||||||||||| || |||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 69 GGATACAAAAGTTCTATCTGC-GCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAA 127
Query 130 ATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAACCGGATAGATTG 183
||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 128 ATGCTGAGAAGGCTTGTTT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8048216160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5