BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915133 Length=183 Score E Sequences producing significant alignments: (Bits) Value AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 261 2e-69 AT3G44130.1 | Symbols: | F-box and associated interaction doma... 169 1e-41 AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 169 1e-41 > AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062 Length=1062 Score = 261 bits (141), Expect = 2e-69 Identities = 171/185 (92%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 1 CAGCTGAGACCTCTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 CAGCTGAGACCTCTTGCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGT 218 Query 61 TGGTCAGAAGGG-ATACAAAAGTTATACCTGCAGAATACGGACCTAAAGCAGGAACGAAG 119 |||||| ||||| ||||||||||| || |||| | || |||||||||||||||||||| Sbjct 219 TGGTCACAAGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAA 278 Query 120 AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAA-CCGGATA 178 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| | Sbjct 279 AAGAACGAAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCT-AAATCCGGGCA 337 Query 179 GATTG 183 ||||| Sbjct 338 GATTG 342 > AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:15881870-15883638 FORWARD LENGTH=942 Length=942 Score = 169 bits (91), Expect = 1e-41 Identities = 106/113 (94%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 71 GGATACAAAAGTTATACCTGCAGAATACGGACCTAAAGCAGGAACGAAGAAGAACGAAAA 130 ||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||||||| Sbjct 798 GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA 857 Query 131 TGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAACCGGATAGATTG 183 |||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 858 TGCTGAGAAGGCTTGTTT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTG 909 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 169 bits (91), Expect = 1e-41 Identities = 107/114 (94%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 71 GGATACAAAAGTTATACCTGCAG-AATACGGACCTAAAGCAGGAACGAAGAAGAACGAAA 129 ||||||||||||| || |||| | ||||||||||||||||| |||||||||||||||||| Sbjct 69 GGATACAAAAGTTCTATCTGC-GCAATACGGACCTAAAGCAAGAACGAAGAAGAACGAAA 127 Query 130 ATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAACCTTAAACCGGATAGATTG 183 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 128 ATGCTGAGAAGGCTTGTTT-GAAGTCATATGGAAGCCTTAAACCGGATAGATTG 180 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8048216160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5