BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915134
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e |... 1181 0.0
AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr... 793 0.0
> AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e
| chr5:3258474-3260234 REVERSE LENGTH=1102
Length=1102
Score = 1181 bits (639), Expect = 0.0
Identities = 715/752 (95%), Gaps = 4/752 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAAAGAAGCTCGAGATCGATGAC 60
|||||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 93 ATGAAGTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGAC 152
Query 61 GACCAAAAACTCCGTGCTTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCT 120
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GATCAAAAACTCCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCT 212
Query 121 TTGGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGTTGTGACAAGCAAGGT 180
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 213 CTAGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT 272
Query 181 TTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCCGCCTCTTGCTTCACAGAGGT 240
|||||||||||||| |||||||| ||||| ||||||||||| || ||||||||| |||||
Sbjct 273 TTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGGT 332
Query 241 ACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTTCGT 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 333 ACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTCCGT 392
Query 301 GGTTGCATTGTCAGCCCTGACCTCTCTGTCCTTAACTTGGTTATTGTGAAGAAGGGTGAA 360
||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |
Sbjct 393 GGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTTGGTCATTGTGAAGAAGGGTGTA 452
Query 361 AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGGCA 512
Query 421 TCAAAGATCCGCAAGTTGTTTAACCTTGGAAAGGAGGATGATGTCAGGAAGTACGTCAAC 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 513 TCAAAGATCCGCAAGTTGTTTAACCTTGGAAAAGAGGATGATGTGAGGAAGTACGTTAAC 572
Query 481 ACCTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAGGTTAGCAAGGCTCCTAAGATC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 ACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAGGTTAGCAAGGCTCCTAAGATC 632
Query 541 CAGAGGCTTGTCACTCCATTGACTCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAG 600
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 633 CAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAG 692
Query 601 AAGAAAATCGCCAAGGCTAACTCTGATGCAGCTGAGTACCAGAAACTTCTTGCCTCCAGA 660
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 693 AAGAGAATCGCCAAGGCTAACTCTGATGCAGCTGATTACCAGAAGCTTCTTGCCTCCAGA 752
Query 661 CTTAAAG-AGCAGCGTGATCGCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGACTCTC 719
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CT-AAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGACTCTC 811
Query 720 TTCTGCTC-TAGCCAAACCCGTTGCTGCTTAA 750
|||||||| | || ||||||||||||||||||
Sbjct 812 TTCTGCTCCT-GCTAAACCCGTTGCTGCTTAA 842
> AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4:15346072-15347727
REVERSE LENGTH=1000
Length=1000
Score = 793 bits (429), Expect = 0.0
Identities = 642/745 (86%), Gaps = 14/745 (2%)
Strand=Plus/Plus
Query 1 ATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAAAGAAGCTCGAGATCGATGAC 60
|||||||||||| | || || || || || || ||||| ||||||||||||||||| ||
Sbjct 14 ATGAAGTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGAT 73
Query 61 GACCAAAAACTCCGTGCTTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCT 120
||||| ||||| ||||| |||| ||||||||| ||||||| ||||| || |||||||||
Sbjct 74 GACCAGAAACTACGTGCGTTTTACGACAAGAGAATCTCTCAAGAAGTCAGTGGAGATGCT 133
Query 121 TTGGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGTTGTGACAAGCAAGGT 180
||||||||||| ||||| |||||||| |||||||||| ||| ||||| || |||||||||
Sbjct 134 TTGGGCGAGGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGT 193
Query 181 TTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCCGCCTCTTGCTTCACAGAGGT 240
||||||||||| ||||||||| ||||||| || ||||| ||||| ||||||||| ||||
Sbjct 194 TTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGGA 253
Query 241 ACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTTCGT 300
|||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||||||
Sbjct 254 ACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGT 313
Query 301 GGTTGCATTGTCAGCCCTGACCTCTCTGTCCTTAA-CTTGGTTATTGTGAAGAAGGGTGA 359
||||||||||| |||||||| |||||||| || || ||| || |||||||||||||||||
Sbjct 314 GGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCTT-GTCATTGTGAAGAAGGGTGA 372
Query 360 -AAGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGG 418
|| |||||||| ||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct 373 GAA-CGATCTTCCTGGGCTTACCGATACTGAGAAGCCAAGAATGAGAGGACCAAAGAGAG 431
Query 419 CATCAAAGATCCGCAAGTTGTTTAACCTTGGA-AAGGAGGATGATGTCAGGAAGTACGTC 477
| || |||||||| || ||||||||| | | ||||| ||||||||||||| || |||
Sbjct 432 CCTCCAAGATCCGTAAACTGTTTAACC-TCAAGAAGGAAGATGATGTCAGGACCTATGTC 490
Query 478 AACACCTACCGCCGTACCTTCACAAACAAGAAGGGCAA-GAAGGTTAGCAAGGCTCCTAA 536
||||| |||||||| | |||||||||||||||||||| ||| |||||||| || |||||
Sbjct 491 AACACTTACCGCCGCAAGTTCACAAACAAGAAGGGCAAGGAA-GTTAGCAAAGCCCCTAA 549
Query 537 GATCCAGAGGCTTGTCACTCCATTGACTCTCCAGAGGAAGAGAGCTAGAATTGCTGACAA 596
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 550 GATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAA 609
Query 597 GAAGAAGAAAATCGCCAAGGCTAACTCTGATGCAGCTGAGTACCAGAAACTTCTTGCCTC 656
|||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| |||||
Sbjct 610 GAAGAAGAAAATTGCTAAGGCTAATTCTGATGCTGCTGATTACCAGAAGCTTCTCGCCTC 669
Query 657 CAGACTTAAAG-AGCAGCGTGATC-GCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGA 714
|| || ||| | |||||||| | | | ||||| |||||||| ||||||||||| |||
Sbjct 670 GAGG-TTGAAGGAACAGCGTGA-CAGGAGGAGTGAGAGTTTGGCAAAGAAGAGGTCGAGA 727
Query 715 CTCTCTTCTGCT-CTAGCCAAACCC 738
|||||||||||| || ||||| |||
Sbjct 728 CTCTCTTCTGCTGCT-GCCAAGCCC 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5