BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915141
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 1613 0.0
> AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:7621346-7623360 REVERSE LENGTH=1775
Length=1775
Score = 1613 bits (873), Expect = 0.0
Identities = 981/1034 (95%), Gaps = 4/1034 (0%)
Strand=Plus/Plus
Query 1 ATGTTAGCTTTAGGTTATGCCAAAGG-AATCGCTCATCGATTTCTCAGAAATCCCAAATG 59
||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||
Sbjct 310 ATGTTAGCTTTAGGTTATGCC-AAGGAAATCGCTCAAAGATTTCTCAGAAATCCAAAATG 368
Query 60 GACCTCTGGACTCTTCTTGCATCACAATCAGTCCCCTAATTACTCCATTTATGTAAAGTC 119
||||||| || ||||||||| |||| |||| ||| |||||||||||| ||||||||||||
Sbjct 369 GACCTCTAGATTCTTCTTGCTTCACTATCAATCCTCTAATTACTCCAGTTATGTAAAGTC 428
Query 120 AAAACCTTTTCTACAAGTTCCATGTAAATCAGCTTCTTTTGATGTTTTACAAGCTCAGAG 179
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 429 AAGACCTTTTCTACAAGTTCAATGTAAATCAGCTTCTTTTGATGTTTCACAAGCTCAGAG 488
Query 180 ACGGAATCTATTTGCGTATGATGGTTTCTTTAGTAGGCGTTACTTAAGTAATTCGACGGT 239
| ||||||||||||||||||||||||| |||||||| |||||||| |||||||| || |
Sbjct 489 ATGGAATCTATTTGCGTATGATGGTTTGTTTAGTAGACGTTACTTGAGTAATTCCACAAT 548
Query 240 AGAGCTAAGAACAGATGATAATGTGGTGAGGTTTGCTTTCAACAATGT-TACTGGTAGTG 298
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||
Sbjct 549 AGAGCTAAGAACAGATGATAATGTGGTTAGGTTTGCTTTCAACAATGTCT-CTAGTAGTG 607
Query 299 GTAACAATGTTGTGCCTACAAGAAAAGAGAAGAAATGGAAACGGGCTAAAATGTCGCGAA 358
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 608 GTAACAATGTTGTACCTACAAGAAAAGAGAAGAAATGGAAACGGGCTAAATTGTCAAGAA 667
Query 359 AGGCTAAAGTGAATGAGTTAAGGTTTTATCGTCTTAAGGCGAAAAAGAAGATGAATTCTC 418
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 668 AAGCTAAAGTGAATGAGTTAAGGTTTTATCGTCTGAAGGCTAAAAAGAAGATGAATTCTC 727
Query 419 CAAACCCTGAAGTTAGGATTCGTTACAAGCTTGAAAAGGCCAAGAGGAAAGAAGAATGGT 478
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 728 CAAACCCTGAAGTTAGAATTCGTTACAAGCTTGAAAAGGCTAAGAGGAAAGAAGAATGGT 787
Query 479 TGATTGAGAAACTGAGGAAATACGATGTCCCGAAGTCACCAGCAGAGCCGTATGATCCAG 538
|||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 788 TGATTGAGAAACTGAGGAAATACGATGTTCCGAAATCACCAGCGGAGCCTTATGATCCAG 847
Query 539 AAAGTTTGACAGAGGAAGAGCAGCATTACTTAAAACGTACAGGTGAAAAGAGAAAGAACT 598
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 848 AGAGTTTGACAGAGGAAGAGCAGCATTACTTAAAACGTACAGGTGAGAAGAGAAAGAACT 907
Query 599 TTGTACTTGTCGGGAGACGAGGAGTGTTTGGAGGTGTGGTTCTGAATTTGCACCTTCATT 658
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 908 TTGTACTTGTCGGAAGACGAGGAGTGTTTGGAGGTGTGGTTTTGAATTTGCACCTTCATT 967
Query 659 GGAAAAAGCATGAAACTGTTAAAGTTATTTGCAAGCCCTGCAACAAACCCGGGCAGGTTC 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GGAAAAAGCATGAGACTGTTAAAGTTATTTGCAAGCCCTGCAACAAACCCGGGCAGGTTC 1027
Query 719 ATGAGTATGCAGAAGAGCTTGCTCGGTTAAGTAAGGGCATTGTGATTGATGTCAAACCTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 ATGAGTATGCAGAAGAGCTTGCTCGGTTAAGTAAGGGCATTGTGATTGATGTCAAACCTA 1087
Query 779 ACAACACCATAGTATTGTACCGTGGGAAAAACTATGTGAGACCAGAAGTGATGTCTCCTG 838
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 ACAACACCATTGTGTTGTACCGTGGGAAAAACTATGTGAGACCAGAAGTGATGTCTCCTG 1147
Query 839 TTGATACCCTCTCTAAAGATAAGGCTTTGGAGAAATATCGGTATGAGCAATCGCTTGAAC 898
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TTGATACTCTCTCTAAAGATAAGGCTTTGGAGAAATATCGGTATGAGCAATCGCTTGAAC 1207
Query 899 ATACGAGTGAGTTCATAGAGAAGCTGGAGAAAGAACTTGAGGAGTACCAGAAGTACGTTG 958
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1208 ATACGAGTGAGTTCATAGAGAAGCTGGAGAAGGAGCTTGAGGAGTACCATAAGTACGTTG 1267
Query 959 CTCGGCACaagaagaagaaagatgaagaagcagagaagaagaaagaGGCAGATTCCAAGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1268 CTCGGCACAAGAAGAAGAAAGATGAAGAAGCAGAGAAGAAGAAAGAGGCGGTTTCGAAGA 1327
Query 1019 GCAAAGTAGTGTAA 1032
||||||||||||||
Sbjct 1328 GCAAAGTAGTGTAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5