BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915144

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24830.1 | Symbols:  | arginosuccinate synthase family | chr...   259    8e-69


> AT4G24830.1 | Symbols:  | arginosuccinate synthase family | chr4:12792873-12795974 
REVERSE LENGTH=1814
Length=1814

 Score =  259 bits (140),  Expect = 8e-69
 Identities = 178/196 (91%), Gaps = 3/196 (2%)
 Strand=Plus/Plus

Query  48   AGCAATTCGAGCTGTTCTATCCGGTGATGGAACGGCCCTGGCTGCTGATTCAAAGGAGGC  107
            ||| ||||||||||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct  327  AGCTATTCGAGCTGTTCTATCCGGTGATGGAACCGCCTTGACTACTGATTCAAAGGAGGC  386

Query  108  TGGACTTTGTGGAAAACTTaaaaaaaGTCGTTCTAGCTTTACAGTGGAGGCTTGGATACC  167
            ||||||| |||||||||| |||||  ||||||||||||| ||||||||||||| || |||
Sbjct  387  TGGACTTCGTGGAAAACTGAAAAAG-GTCGTTCTAGCTT-ACAGTGGAGGCTTAGACACC  444

Query  168  TCTGTCATTGTGCCATGGCTTAAGGAGAACTACGGTTGTGAAGTTGTATGTTTCACCGCC  227
            |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || 
Sbjct  445  TCTGTCATTGTGCCATGGCTTAAGGAGAACTATGGTTGTGAAGTTGTGTGCTTCACTGCT  504

Query  228  GATGTTGGTCAGAGGC  243
            |||||||||||| |||
Sbjct  505  GATGTTGGTCAG-GGC  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5