BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915150
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13020.3 | Symbols: MHK | Protein kinase superfamily protein... 2034 0.0
> AT4G13020.3 | Symbols: MHK | Protein kinase superfamily protein
| chr4:7603826-7607155 FORWARD LENGTH=1867
Length=1867
Score = 2034 bits (1101), Expect = 0.0
Identities = 1265/1345 (94%), Gaps = 7/1345 (1%)
Strand=Plus/Plus
Query 4 GAAAGTGATGATGGTACTTGTGG-TTTTGGTCTATGTAGGTATAAGATTTTGGAAGAGCT 62
||||||||||||||| |||||| ||||| | | ||||||||||||||||||||||||||
Sbjct 183 GAAAGTGATGATGGTGTTTGTGGTTTTTGTTATGTGTAGGTATAAGATTTTGGAAGAGCT 242
Query 63 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCTGTAAACTTGGAAACATATGAAGTTGT 122
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 243 TGGTGATGGTACTTGTGGTAGTGTATATAAAGCAGTAAATTTGGAAACATATGAAGTTGT 302
Query 123 TGCTGTTAAAAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGCTGTTAAGAAGATGAAGAGAAAGTTTTATTATTGGGAAGAGTGTGTGAATCTGCGAGA 362
Query 183 AGTAAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGTTAAGGCTCTTCGTAAGCTAAATCATCCTCATATCATAAAGTTGAAGGAGATTGTGAG 422
Query 243 GGAACATAATGAGCTGTTTTTCATCTTCGAGTGCATGGACCACAATCTGTACCATATAAT 302
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 423 AGAACATAATGAGCTTTTTTTCATCTTTGAGTGCATGGATCACAATCTGTACCATATAAT 482
Query 303 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATCAGAAGTTTTATGTCGCAGATGCT 362
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 483 GAAAGAAAGGGAACGACCTTTTTCTGAAGGAGAAATAAGAAGTTTTATGTCTCAGATGCT 542
Query 363 GCAAGGGCTCGCACATATGCATAAAAACGGTTATTTCCATCGAGACCTCAAACCCGAGAA 422
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 543 GCAAGGGCTCGCACACATGCATAAAAACGGTTATTTCCATCGAGACCTGAAACCTGAGAA 602
Query 423 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGCTCGCTAGAGAAGTTGC 482
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 603 TTTGCTGGTGACCAACAATATCCTGAAAATTGCTGACTTTGGGTTGGCTAGAGAAGTTGC 662
Query 483 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ATCTATGCCTCCTTACACTGAATATGTGTCCACACGTTGGTATCGAGCTCCAGAAGTTTT 722
Query 543 GCTACAGTCTTCATCATACACTCCTGCAGTTGACATGTGGGCAGTGGGGGCGATATTAGC 602
|||||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 723 GCTACAGTCTTCATTATACACTCCTGCAGTTGACATGTGGGCAGTTGGAGCGATACTAGC 782
Query 603 TGAGCTTTACGCTTTATCTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 662
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGAGCTTTACGCTTTAACTCCGTTATTTCCTGGTGAAAGTGAGATAGATCAATTATACAA 842
Query 663 GATCTGCTGTGTTCTTGGCAAGCCGGATTGGACCACCTTCCCTGAAGCGAAAAGTATATC 722
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 843 AATCTGCTGTGTTCTTGGCAAGCCGGACTGGACCACGTTCCCTGAAGCGAAAAGCATATC 902
Query 723 TCGAATAATGAGTATTAGTCACACAGAATTTCCGCAGACACGAATTGCTGATCTACTCCC 782
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 903 TCGAATTATGAGTATTAGTCACACAGAGTTTCCGCAGACACGAATTGCTGATTTACTTCC 962
Query 783 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAATGCTGCTCCTGAAGCTATTGATTTGATCAATCGACTTTGCTCATGGGATCCATTGAA 1022
Query 843 ACGACCAACTGCTGATCAGGCACTAAATCATCCGTTTTTCAGTATGGCTACACAGGCTTC 902
|||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1023 ACGACCAACTGCTGATGAGGCACTAAATCATCCATTTTTCAGTATGGCTACGCAGGCTTC 1082
Query 903 ATATCCTCTCCATGACCTTGAGCTGAGGCTTAATAACATGGCGGCAATGCCTAATCTCGA 962
||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||| ||
Sbjct 1083 ATATCCTATCCATGACCTTGAGCTGAGGCTTGATAATATGGCGGCGTTGCCTAATCTTGA 1142
Query 963 GCTAAATCTCTGGGACTTTAATACTGAACCTGAGGAATGTTTTCTTGGCTTGACACTGGC 1022
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||
Sbjct 1143 GCTAAATCTCTGGGACTTTAACAGAGAACCTGAAGAATGTTTTCTTGGCTTGACACTAGC 1202
Query 1023 TGTAAAACCAAGTGCTCCTAAACTAGAAATGGTGCGGAATGTATCTCAGGACATGAGCGA 1082
||| |||||||||||||| |||||||||||| | || |||||||||||||||||||||||
Sbjct 1203 TGTGAAACCAAGTGCTCCCAAACTAGAAATGCTCCGCAATGTATCTCAGGACATGAGCGA 1262
Query 1083 GAATTTTCTCTTTTTCCCTGGGGTAAATAATGATCGGGAACCATCAGTTTTCTGGTCTCT 1142
|||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct 1263 GAATTTTCTCTTTTGCCCCGGGGTCAACAATGATCGAGAACCATCAGTTTTCTGGTCTCT 1322
Query 1143 GCTCTCTCCTGATGAAAATGGCCTCCACACTCCGGTTGAATCATCTCCTTTATCTCTGTC 1202
|||||||||||||||||| ||||||||| | || ||||||||||||||||||||| ||||
Sbjct 1323 GCTCTCTCCTGATGAAAACGGCCTCCACGCGCCAGTTGAATCATCTCCTTTATCTTTGTC 1382
Query 1203 CTTCAG---TCCAATGCAGCATCATACAACACTGGGACCTCCGCAGTCGACAGGGTTCAC 1259
||||| |||||||||||| || || || | |||||||| ||||||| || |||||
Sbjct 1383 TTTCAGCAGTCCAATGCAGCAACA--CA-CAGTTGGACCTCCACAGTCGAGTGGCTTCAC 1439
Query 1260 AATGACATCATCAGTGCAACCGAATATGTTGGACCGCCCGTGGATGGCTGTGTCTGCGCC 1319
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 AATGACATCATCAATGCAACCGAATATGTTGGACCGCCCGTGGATGGCCGTGTCTGCGCC 1499
Query 1320 ATTTCAACAAAGTCATTACCTCTGA 1344
||||||||||||||||||||||||
Sbjct 1500 GTTTCAACAAAGTCATTACCTCTGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5