BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915153
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12980.1 | Symbols: | Auxin-responsive family protein | chr... 1796 0.0
> AT4G12980.1 | Symbols: | Auxin-responsive family protein | chr4:7589395-7591102
REVERSE LENGTH=1488
Length=1488
Score = 1796 bits (972), Expect = 0.0
Identities = 1114/1185 (94%), Gaps = 0/1185 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCTTACCTTAGAATCTCTCTTTCTTTTGTCTTCTGGGCTTTGCTACTCTCA 60
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 29 ATGGATTCTTCTTACCTTAGAATCTCTCTTTCTTTTCTCTTCTGGGCTTTACTACTCTCA 88
Query 61 CCGGCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCGTCAGATCTTAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 89 CCGGCTGTGTCACAGTCATCTTCTTGTTCGTCACAGACATTTTCCGGCGTCAAATCTTAC 148
Query 121 CCTCACTGCCTTGACCTCCCTGATCTTAAAGCTTTTCTCCATTACTCTTATGACGCTTCT 180
|||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 149 CCTCACTGTCTCGACCTCCCTGATCTTAAAGCCATTCTCCATTACTCTTATGACGCATCT 208
Query 181 AACACCACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGCTGGATCGCT 240
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 209 AACACAACTCTCGCCGTTGTTTTCTCTGCTCCACCGTCAAAACCTGGTGGTTGGATCGCT 268
Query 241 TGGGCTATTAACCCTAAATCTACCGGCATGGCTGGATCTCAAGCCCTCGTTGCCTCTAAA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 269 TGGGCTATTAACCCTAAATCCACCGGCATGGCTGGATCTCAAGCCCTCGTTGCCTCTAAG 328
Query 301 GACCCTAAAACCGGCGTTGCCTCTGTCACGACCCTTAATATCGTCTCTTACAATTCTCTT 360
||||||| ||||||||||| || || ||||||||||| ||||||||||||| |||||
Sbjct 329 GACCCTAGCACCGGCGTTGCTTCCGTGACGACCCTTAACATCGTCTCTTACAGCTCTCTG 388
Query 361 GTTCCCTCGAAGCTATCCTTTGAAGTGTGGGATATTAAGGCGGAGGAGGCGGCTAACGAC 420
||||||||||| || |||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 389 GTTCCCTCGAAACTGTCCTTTGACGTGTGGGATGTTAAGGCGGAGGAGGCGGCTAATGAC 448
Query 421 GGTGGAGCTTTGCGAATCTTTGCGAAGGTGAAGGTTCCGGCGGATTTGGCGGCGAATGGG 480
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 449 GGTGGAGCTTTACGAATCTTTGCGAAAGTGAAGGTTCCGGCGGATTTAGCGGCGAGTGGG 508
Query 481 AAGGTTAACCAGGTTTGGCAGGTCGGTCCGGGAGTGTCTAATGGGAGGATACAGCCTCAT 540
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 509 AAGGTTAACCAGGTTTGGCAGGTTGGTCCGGGAGTGTCTAATGGGAGGATACAGGCTCAT 568
Query 541 GATTTCAGTGGTCCCAATCTCAACTCATTGGCACCGCTCGATTTAACCGGGGCCACCACT 600
|||||||| ||||||||||| |||||| ||| | | ||||||||||||||| ||||| |
Sbjct 569 GATTTCAGCGGTCCCAATCTTAACTCAGTGGGATCACTCGATTTAACCGGGACCACCCCC 628
Query 601 GGAGTCCCTGTCTCCGGAGGCGGCGGTGCCGGCAACTCTAGAATTCACAAGAGAAACATC 660
|||||||||||||||||||| || |||||||| || |||||||| ||||||||||| |||
Sbjct 629 GGAGTCCCTGTCTCCGGAGGTGGTGGTGCCGGTAATTCTAGAATCCACAAGAGAAATATC 688
Query 661 CATGGGATATTGAACGCTGTGAGTTGGGGACTTCTATTTCCCATTGGAGCAATGATAGCT 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CATGGAATATTGAACGCAGTGAGTTGGGGACTTCTATTTCCCATTGGAGCAATGATAGCT 748
Query 721 AGGTACATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTTTACCTCCACGTGTCATGC 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AGGTATATGAGAATCTTTGAATCAGCAGATCCTGCTTGGTTTTACCTCCACGTGTCATGC 808
Query 781 CAATTCTCCGCTTATGCCATCGGTGTTGCCGGATGGGCCACCGGACTCAAACTCGGTTCC 840
|||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 809 CAATTCTCTGCTTATGTCATCGGTGTTGCCGGATGGGCCACCGGACTCAAGCTTGGTTCA 868
Query 841 GAATCTAAAGGTATTCAGTACACCACTCACCGGAACATAGGCATCAGTCTCTTCTCTTTG 900
|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
Sbjct 869 GAATCTAAAGGTATTCAGTACAACACTCACCGGAACATCGGCATCTGTCTCTTCTCTATA 928
Query 901 GCCACTCTTCAGATGTTTGCGATGCTGTTGCGGCCAAGGAAGGACCACAAGTTTAGATAC 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 929 GCCACTCTTCAGATGTTTGCGATGCTGTTGCGGCCAAGGAAGGACCACAAGTTTAGATTC 988
Query 961 GTTTGGAATATTTACCACCACGGAGTTGGATACTCTATCCTCATCCTTGGAATCATCAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GTTTGGAATATTTACCACCACGGAGTTGGATACTCTATCCTCATCCTTGGAATCATCAAT 1048
Query 1021 GTTTTCAAAGGTCTTAGCATCTTGAACCCGAAGCATACTTACAAGACCGCTTATATCGCG 1080
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1049 GTTTTCAAAGGTCTTAGCATCTTGAATCCAAAGCATACTTACAAGACGGCTTATATCGCT 1108
Query 1081 GTGATTGGGACCTTAGGAGGCATCACTTTACTCTTGGAAGTTGTTACTTGGGTAATTGTC 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1109 GTGATTGGGACCTTAGGAGGCATCACGTTACTCTTGGAAGTTGTTACTTGGGTCATTGTC 1168
Query 1141 CTCAAGAGAAAATCTGCCAATTCCACAAAGCCTCTTAAAGCCTAA 1185
|||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 1169 CTCAAGAGAAAATCTGCCAAGTCTACAAAGCCTCTCAAGGCCTAA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58182431655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5