BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915183
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12820.1 | Symbols: | F-box family protein with a domain of... 475 3e-133
AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7... 399 2e-110
AT1G67160.1 | Symbols: | F-box family protein with a domain of... 239 4e-62
AT3G03726.1 | Symbols: | Protein of unknown function (DUF295) ... 84.2 2e-15
> AT4G12820.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:7527048-7529356 REVERSE
LENGTH=1552
Length=1552
Score = 475 bits (257), Expect = 3e-133
Identities = 353/394 (90%), Gaps = 27/394 (7%)
Strand=Plus/Plus
Query 11 TGGAGAAGAAGAATCTAATTATCAATGCCGGTTTCCAAGATTTATGCA-----C------ 59
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 250 TGGAGAAGAAGAATCTAATTATCAATGCCGGTTTCCAAGATTTATGCATCTCTCATGGAA 309
Query 60 -C-T-C---TC--A-T--GG-TTTTGACTTGGCCGTGATACAGAAGAAACAAAAGAAGGA 107
| | | || | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 310 GCGTCCTTATCTAACTAGGGTTTTTGACTTGGCCGTGATACAGAAGAAACAAAAGAAGGA 369
Query 108 GATGAGCGATTCCAACGAAGAGACATGCAACGACGATTCAAAGCAACCGGTACTTGTCTT 167
||||||||||||| | ||| | | ||||||||||||||||||||| || |||||||||||
Sbjct 370 GATGAGCGATTCCGAGGAAAAAAAATGCAACGACGATTCAAAGCAGCCTGTACTTGTCTT 429
Query 168 GGACCTGCTTAGATCGATCTTGGAGCGCTTAAGCTTTGTTGATTTTCATCGAGCCAGATG 227
|||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 GGACTTGCTTAGATCGATATTGGAGCGCTTAAGCTTTGTTGATTTTCATCGAGGCAGATG 489
Query 228 CATTTCTTCAGAATGGTATTCAGCTTCGGAATCATG-CATCAG-AGTAAAAAATCCAACA 285
|||||||| ||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 490 CATTTCTTTAGAATGGTATTCAGCTTCGGAATCATGTC-TC-GCAGTAAAAAATCCAACA 547
Query 286 ACTCCATGGATCATCCTCTTTCCAAGCGAACATGTGGAAAACAAAAACGATTCATGTAAG 345
| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 548 AGTCCATGGATCATCCTCTTTCCAAGCGAAAATGTGGAAAGCAAAAACGATTCATGTAAG 607
Query 346 TTGTACAATCCTCGTGACCATAGTTCCTACATAG 379
||||||||||||||||||||||||||||||||||
Sbjct 608 TTGTACAATCCTCGTGACCATAGTTCCTACATAG 641
> AT4G12810.1 | Symbols: | F-box family protein | chr4:7522831-7523979
REVERSE LENGTH=1149
Length=1149
Score = 399 bits (216), Expect = 2e-110
Identities = 352/415 (85%), Gaps = 20/415 (5%)
Strand=Plus/Plus
Query 544 AAAGTTGCTGTCACTTTGTCTGGAGAGGTTTTGATCATTTTAGCTAGAGTGGAACCATAT 603
||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 739 AAAGTTGTTGTCACTTTGTCTGGAGAAGTTTTGATCATTGTAGCTAAAGTGGAACCATAT 798
Query 604 CCGAGGATGAG---ATGCTTCTTCGACGTCTACAAGATGGATCCTAAATCATCA-GAATG 659
|| |||| ||| ||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 799 CCTAGGACGAGATTATGCTTCTTCGCCGTCTACAAGATGGATCCTAAATCATCAAGA-TG 857
Query 660 GAAAATGATTAAGTCTATTGGAGGCGAAGCATTGCTTTTAGATCTAGGAATAAGGGTTGA 719
| ||| |||||||||| | | ||||||||||||| |||||||||||||||||| ||||||
Sbjct 858 GGAAACGATTAAGTCTCTAGCAGGCGAAGCATTGATTTTAGATCTAGGAATAACGGTTGA 917
Query 720 GGCGAAAGTTATGAAAAATTGCATATATTTTAGTAGTGATCAGTTTCGTAGATACAATGG 779
||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 918 GGCGAAAGTGATGAAAAATTGCATATATTTTAGTAATGATCAGTTTCATAGATACAATGA 977
Query 780 GAATAGTCTATGCAATG-ATTATAACAATAACGATAT-TCACGTCTACCATATTCGAACC 837
|||||||||||| |||| || |||||| | || | | | |||||||||| ||||| |
Sbjct 978 GAATAGTCTATGGAATGTATC-TAACAAGAGCGGTGTCTT-CGTCTACCATTTTCGATCT 1035
Query 838 GATCAA-GTAGTCCAAGTGTTTGAAGATCTTACTGCGTCC-CC-G-AC---GA---TACT 887
| | || || |||||| || ||||| ||||||||| || || | || || ||||
Sbjct 1036 GCT-AATGTGGTCCAATTGGTTGAACTTCTTACTGCTTCTTCCAGGACCTCGAAAATACT 1094
Query 888 TTTCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTGGAAACTGGTTGCTTTAA 942
|||||||||||||||||| ||||| ||||||||| | ||| ||||||||||||
Sbjct 1095 TTTCAAGGATGCTCGTTGTTTTTTTCCCACTTTTACTTCAAAATGGTTGCTTTAA 1149
> AT1G67160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr1:25124819-25127098 REVERSE
LENGTH=1353
Length=1353
Score = 239 bits (129), Expect = 4e-62
Identities = 311/396 (79%), Gaps = 24/396 (6%)
Strand=Plus/Plus
Query 548 TTGCTGTCACTTTGTCTGGAGAGGTTTTGATCATTTTA---GCTAGAGTGGA-ACCATAT 603
||||||| |||||||||||||| |||||||||||| || | || | |||| | | |
Sbjct 776 TTGCTGTGACTTTGTCTGGAGAAGTTTTGATCATTGTAGGTGGTAAAATGGATA-GTTCT 834
Query 604 CC-GAGGATGAGATGCTTCTTCGAC-GTCTACAAGATGGATCCTAAATCATCAGAATGGA 661
|| |||| | | |||| ||||| || ||| | ||||||||||| ||||||||||||| |
Sbjct 835 CCAGAGGCT-AAATGCGTCTTC-ACTGTCAATAAGATGGATCCAAAATCATCAGAATTTA 892
Query 662 -A--AATGATTAAGTCTATTGGAGG-CGAAGCATTGCTTTTAGATCTAGGAATAAGGGTT 717
| | | || |||||||| || || ||| ||||||||||| ||| ||||||| | ||||
Sbjct 893 CAGTACTAATCAAGTCTATAGG-GGACGAGGCATTGCTTTTGGATTTAGGAATTACGGTT 951
Query 718 GAGG-C---GA--AAGTTATGAAAAATTGCATATATTTTAGTAGTGATCAGTTTCGTAGA 771
|| | || |||||||| | |||||||||||||||||| |||||||| || ||||
Sbjct 952 CCGGCCAAAGATGGAGTTATGAGAGATTGCATATATTTTAGTAATGATCAGTATCATAGA 1011
Query 772 TACAATGGGAATAGTCTATGCAATGATTATAACAAT-AACGATATTCACGTCTACCATAT 830
| ||||| ||||||| || ||| ||||||| | | || |||| ||| ||||| |
Sbjct 1012 TGTTGTGGGATTAGTCTACGCGATGGTTATAACGCTGACCG-TATTTGCGTTTACCA-AA 1069
Query 831 TC-GAACCGATCAAGTAGTCCAAGTGTTTGAAGATCTTACTGCGTCCCCGACGATACTTT 889
|| ||| |||| | || ||||||| ||||||| |||| ||| | ||| |||| | |||||
Sbjct 1070 TCGGAAGCGATTATGTGGTCCAAGAGTTTGAACATCTAACTACTTCCTCGACAAAACTTT 1129
Query 890 TCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTG 925
||||||||||||||||||||||||||||||||||||
Sbjct 1130 TCAAGGATGCTCGTTGGTTTTTCCCCACTTTTGGTG 1165
> AT3G03726.1 | Symbols: | Protein of unknown function (DUF295)
| chr3:933341-934464 REVERSE LENGTH=870
Length=870
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 392 TAGACAAAGCGGTTTTGTGGGTAGATGAAAAAAGCAGAGATTACTTGGTTGTTTGGA 448
|||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 347 TAGACACTGCGGTTTTGTGGGTAGATGAAAAAAGCAGAGATTACTTAGTTGCTTGGA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5