BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915194

Length=1140
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17270.1 | Symbols:  | Protein prenylyltransferase superfami...   121    2e-26


> AT5G17270.1 | Symbols:  | Protein prenylyltransferase superfamily 
protein | chr5:5679991-5685597 FORWARD LENGTH=2704
Length=2704

 Score =  121 bits (65),  Expect = 2e-26
 Identities = 85/94 (90%), Gaps = 4/94 (4%)
 Strand=Plus/Plus

Query  255  TGTACAGAGAGAATATGAATTAGCTGAATGGGAGAACTGGGCTAAGATTCAGCTCATGTC  314
            ||| ||||||| | | ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  459  TGT-CAGAGAGTA-AGGAATTAGTTGAGTGGGAGAACTGGGCTAAGATTCAGCTCATGTC  516

Query  315  TGTAGGTTCTGACTTG-TTCGGGAAGTTTTCTAA  347
            ||| |||||||||||| || ||||||||||||||
Sbjct  517  TGTCGGTTCTGACTTGCTT-GGGAAGTTTTCTAA  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55923407130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5