BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915201
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12740.1 | Symbols: | HhH-GPD base excision DNA repair fami... 1821 0.0
> AT4G12740.1 | Symbols: | HhH-GPD base excision DNA repair family
protein | chr4:7494578-7497596 REVERSE LENGTH=1893
Length=1893
Score = 1821 bits (986), Expect = 0.0
Identities = 1212/1319 (92%), Gaps = 23/1319 (2%)
Strand=Plus/Plus
Query 173 aaGAAGAAGAAGAACCGCTTGGAGGAGATATAGAGGATCTCTTTAGCGAAAATGAAACTC 232
||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 326 AAGCAGAAGAAGAAGCGCTTGGAGGAGATATAGAGGATCTCTTTAGTGAAAATGAAACTC 385
Query 233 AGGAAATCAGAATGGGTATGCTTGATTGGTACGATGTGAATCAGCGAGATCTTCCATGGA 292
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 386 AGAAAATCAGAATGGGTTTGCTTGATTGGTACGATGTGAATAAGAGAGATCTTCCATGGA 445
Query 293 GGAAGAGAAGAAGTGAAAATGAAAAGGAGAGAAGAGCTTATGAGGTTTGGGTATCGGAGA 352
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GGAACAGAAGAAGTGAAAGTGAAAAGGAGAGAAGAGCTTATGAGGTTTGGGTATCGGAGA 505
Query 353 TTATGCTCCAGCAAACTAGGGTTCAGACTGTAATGGACTATTATAAACGTTGGATGAATA 412
||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct 506 TTATGCTTCAGCAAACTAGGGTTCAGACTGTAATGAAGTATTATAAACGTTGGATGCAGA 565
Query 413 AATGGCCAACCATTTATGACCTTGCTCAAGCTTCTCTTGAGGAAATGGGAAAAGATA--A 470
|||||||||||||||||||||||| ||||||||||||||| | ||| | | || |
Sbjct 566 AATGGCCAACCATTTATGACCTTGGTCAAGCTTCTCTTGA-G-AAT-CTTATCGTTAGTA 622
Query 471 GATGAAGAAAGAGCTTGCTTATCTT---TGTTTTG-GCAAATTGGAGGTAAACGAAATGT 526
||| ||| ||||||| ||| |||| | || | ||| ||||||||||||||||
Sbjct 623 GATCAAG--AGAGCTTTCTTTTCTTAGGGGGAATGAG-AAAAAAGAGGTAAACGAAATGT 679
Query 527 GGGCAGGTTTGGGATACTATCGGCGGGCACGTTTTCTTTTAGAGGGAGCAAAGATGGTTG 586
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 680 GGGCAGGTTTGGGATACTATCGGCGGGCACGTTTTCTTTTAGAGGGTGCAAAGATGGTTG 739
Query 587 TTGCAGGGAAGGATGGTTTTCCTAATCAAGCATCTAGCTTGATGAAAGTTAAAGGAATAG 646
||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 740 TTGCAGGGACGGAGGGTTTCCCTAATCAAGCGTCTAGCTTGATGAAAGTTAAAGGAATAG 799
Query 647 GAGAGTATACAGCCGGAGCAATTGCCTCAATTGCTTTCAATGAGGCAGTACCTGTTGTTG 706
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GACAGTACACAGCCGGAGCAATTGCCTCAATTGCTTTCAATGAGGCAGTACCTGTTGTTG 859
Query 707 ATGGAAACGTGATTAGAGTGCTTGCCAGATTAAAGGCCATCTCTGCTAATCCAAAAGACC 766
||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 860 ATGGAAATGTGATAAGAGTGCTTGCTAGATTAAAAGCCATCTCAGCTAATCCAAAAGACC 919
Query 767 GGCTTACGGCCAGGAATTTCTGGAAACTAGCTGCCCAGCTAGTGGATCCTTCACGTCCTG 826
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 920 GACTTACGGCCAGGAATTTCTGGAAACTAGCTGCTCAGCTAGTGGATCCTTCACGCCCTG 979
Query 827 GAGATTTCAACCAATCTCTAATGGAGCTTGGTGCGACTCTATGCTCTGTATCAAAGCCAA 886
||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||
Sbjct 980 GAGATTTCAACCAATCTCTGATGGAGCTTGGTGCTACACTATGCACTGTATCAAAGCCAA 1039
Query 887 GTTGCTCTTCTTGTCCTGTTTCCAGCCAATGTCGTGCATTTTCACTTTCCGAGGAAAACA 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTTGCTCTTCTTGTCCTGTTTCCAGCCAATGTCGTGCATTTTCACTTTCCGAGGAAAACA 1099
Query 947 GAACGATTTCCGTGACGGATTATCCTACAAAAGTGATCAAGGCCAAGCCAAGGCGCGACT 1006
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1100 GAACGATTTCCGTGACAGATTATCCTACAAAAGTAATCAAGGCCAAGCCAAGGCACGACT 1159
Query 1007 TTTGTTGCGTATGTGTTTTGGAGATAC-TGAATCAGGAGAGGAACCAATCAGGAGGTAGA 1065
|||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1160 TTTGTTGCGTTTGTGTTTTGGAGATACAT-AATCTGGAGAGGAACCAATCAGGAGGTAGA 1218
Query 1066 TTTGTTCTTGTAAAGAGACCCGAACAAGGTCTGCTTGCTGGTCTTTGGGAGTTCCCATCT 1125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTTGTTCTTGTAAAAAGACCCGAACAAGGTCTGCTTGCTGGTCTTTGGGAGTTCCCATCT 1278
Query 1126 GTTATATTGGATGAGGAACCTGATTCGCCAACAAGGAGGAGCGCGATCAACCTCTTCCTT 1185
|||||||| |||||||| |||||||| |||||||||||| ||| || ||| ||| ||||
Sbjct 1279 GTTATATTAAATGAGGAAGCTGATTCGGCAACAAGGAGGAACGCAATAAACGTCTACCTT 1338
Query 1186 AAGGAAGCATTTC------ATGTAGAACCCAAGAAAATATGCACTATAGTTTCAAGAGAA 1239
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1339 AAGGAAGCATTTCGTTTTCATGTAGAACTCAAGAAAGCATGCACTATAGTTTCAAGAGAA 1398
Query 1240 GAACTTGGAGAATTCGTCCACGTCTTCACTCACATACGTCGAAAAGTTTATGTGGAGCTA 1299
||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1399 GAACTCGGAGAATTCGTCCACATATTCACTCACATTCGTCGAAAAGTTTATGTGGAGCTA 1458
Query 1300 TTAGTTGTACAACTTACAGGTGGAACCAAAGATCTGTTCAAAGGTCAGGCAAAGGTCAGT 1359
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |
Sbjct 1459 TTAGTTGTACAACTTACAGGCGGAACCGAAGATCTGTTCAAAGGTCAGGCAAAGGACACT 1518
Query 1360 CTAACATGGAAGTGTGTGGGAAGTGATGTTCTTTCTACCATGGGACTGACATCGGCTGTT 1419
|||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||
Sbjct 1519 CTAACATGGAAGTGTGTGAGCAGTGATGTTCTTTCTACCTTGGGACTGACATCAGCTGTT 1578
Query 1420 AGAAAGGTATCTCCTTTTCCGTCTTCAAATCATAGAAAAAGATTATCCTTGGATGTGAT 1478
||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||
Sbjct 1579 AGAAAGGTACCTCCTTTTC-GTCTTCAA--CATATTAAAAGACTATCCTTGGATGTGAT 1634
Score = 228 bits (123), Expect = 1e-58
Identities = 171/192 (89%), Gaps = 12/192 (6%)
Strand=Plus/Plus
Query 1 ATGGCTTGTCTTCTTCGCGTGGCTCTAAACCCTACATTTGAAAGATCAACGGTCGCTTCA 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTTGTCTTCTCCGCGTGGCTCTAAACCCTACATTCGAAAGATCAACGGTCGCTTCA 60
Query 61 GAGAGACAAAATCC-AAG----TTC-------TCATTGCAAAGTTTCGAGCTTTAAGACC 108
||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 61 CAGAGACAAAATCCAAAGACCATTCTAAGTTTTCATTGCAAAGTTTCGAGCTTTAAGACC 120
Query 109 AAAACGATGTCGCAATCTTCTGCTCCTGGCGAGAAACTCATGAGAAAGTGTCGAAAGaaa 168
||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 121 AAAACGATGTCCCAATCTTTTGCTCCTCGCGAGAAACTCATGAGAAAGTGTCGAGAGAAA 180
Query 169 aaaaaaGAAGAA 180
||| ||| ||||
Sbjct 181 AAAGAAGCAGAA 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5