BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915218

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01120.1 | Symbols: RPS15 | chloroplast ribosomal protein S1...   472    1e-132


> ATCG01120.1 | Symbols: RPS15 | chloroplast ribosomal protein 
S15 | chrC:123296-123562 REVERSE LENGTH=267
Length=267

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 263/267 (99%), Gaps = 0/267 (0%)
 Strand=Plus/Plus

Query  1    ATGATAAAAAATACATTCATTTCATTTGAAGAACAAAAAGAAGAAAGCAGGGGATCTGTT  60
            ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGATAAAAAATATAGTCATTTCATTTGAAGAACAAAAAGAAGAAAGCAGGGGATCCGTT  60

Query  61   GAATTTCAAGTATTTAGTTTCACTAATAAGATACGAAGACTTACTTCACATTTAGAATTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   GAATTTCAAGTATTTAGTTTCACTAATAAGATACGAAGACTTACTTCACATTTGGAATTG  120

Query  121  CACAGAAAAGATTATTTATCTCAGCGGGGTCTACGAAAAATTCTGGGAAAACGTCAACGA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CACAGAAAAGATTATTTATCTCAGCGGGGTCTACGAAAAATTCTGGGAAAACGTCAACGA  180

Query  181  CTGCTGGCTTATTTGTCaaaaaaaaaTAGAGTACGTTATAAAGAATTAATTAATCAGTTG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTGCTGGCTTATTTGTCAAAAAAAAATAGAGTACGTTATAAAGAATTAATTAATCAGTTG  240

Query  241  AATATTCGGGAATTAAAAACTCGTTAA  267
            |||||||||||||||||||||||||||
Sbjct  241  AATATTCGGGAATTAAAAACTCGTTAA  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5