BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915223

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00940.1 | Symbols: TRNA.1 | tRNA-Ala | chrC:103665-104538 F...  71.3    3e-12
  ATCG01190.1 | Symbols: TRNA.2 | tRNA-Ala | chrC:134111-134984 R...  71.3    3e-12


> ATCG00940.1 | Symbols: TRNA.1 | tRNA-Ala | chrC:103665-104538 
FORWARD LENGTH=73
Length=73

 Score = 71.3 bits (38),  Expect = 3e-12
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  73   GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  110
            ||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  38


> ATCG01190.1 | Symbols: TRNA.2 | tRNA-Ala | chrC:134111-134984 
REVERSE LENGTH=73
Length=73

 Score = 71.3 bits (38),  Expect = 3e-12
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  73   GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  110
            ||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAA  38



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5