BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915235
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12670.1 | Symbols: | Homeodomain-like superfamily protein ... 1613 0.0
> AT4G12670.1 | Symbols: | Homeodomain-like superfamily protein
| chr4:7472079-7474519 FORWARD LENGTH=1829
Length=1829
Score = 1613 bits (873), Expect = 0.0
Identities = 1338/1551 (86%), Gaps = 78/1551 (5%)
Strand=Plus/Plus
Query 1 ATGGTGAGTGACAAGTCTAGGAAGGGATGTAGAGAGAGTCTAGGAGGAGTAGATTTGGGT 60
||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 330 ATGCTGACTGACAAGTCTAGGAAGGGATGTAGAGAGAGTTTAGGAGGAGTAGATGTGGGT 389
Query 61 TTTATTATGGAGAAAGAAGCTGGAGGTGTCCAGAATTTAGTGGAGGTTAATGTATCAGGA 120
|| || ||||||||||||||||||||||| ||||| |||||||||||||||| || |||
Sbjct 390 TTAATGATGGAGAAAGAAGCTGGAGGTGTTGAGAATGTAGTGGAGGTTAATGTTTCTGGA 449
Query 121 GGCAGAACTAGAACATTAGCAAGTGGTAATCTTACTGGGAATATAAGAGAAGGTGATGGA 180
|| | || | | | ||| ||| |||||| | ||| ||||||||||||
Sbjct 450 -GC---A--AG-----T-GGTA-TGG-----TTAGTGGGAAGAGAAGGGAAGGTGATGGA 491
Query 181 TTAAACAGTAAATGCATGGTAATGGAGAAGAATCAGATAATGCAAGAAGTTGCGGCTCAG 240
||||||| |||||| || || || ||||||| ||||| ||||||| ||||||| ||| |
Sbjct 492 TTAAACAATAAATGGATAGTGATCGAGAAGAGTCAGAAAATGCAAAAAGTTGCTGCTGAA 551
Query 241 ACTCATTCTCGGGGAAAGTCTAAGGGTGATGATGCTGATGT-GGATGAGGGAAGACAGCA 299
||||||||||||| ||| ||||||| ||||||| |||| | |||| |||||||| ||||
Sbjct 552 ACTCATTCTCGGGAAAATTCTAAGGCTGATGATATTGAT-TCGGATAAGGGAAGAAAGCA 610
Query 300 GCGAGGAAGATTGAGTGAGATA-AATCATGAAACTTT-GGATGTGTGCAATGT-TAATGC 356
|||||||||||| | ||||| | ||| |||||| ||| ||| |||| || | ||||||
Sbjct 611 GCGAGGAAGATTTAATGAGA-AGAATTATGAAA-TTTCATATGCGTGC-ATTTCTAATGC 667
Query 357 GGGTGAGGGAAGAAA--TAA-GG---CAAGAGGTAGTGAGAAGAAGCATGGAAAGGTA-C 409
|||||||||||||| || || |||||||| |||||| || ||| || | | |
Sbjct 668 AGGTGAGGGAAGAAAGGGAAGGGTAAGAAGAGGTAATGAGAAAAATCAT--CAA-GCACC 724
Query 410 --AAGCGCGCAAT-TCTGATGTAGGTGAGGAAAGAAAGCAG-CAGAGAAGATGTGATGAT 465
|||||| || | | |||||| |||| ||||||||||| | ||||||||||| ||||||
Sbjct 725 AGAAGCGCACAGTAT-TGATGTTGGTGGGGAAAGAAAGC-GACAGAGAAGATGCGATGAT 782
Query 466 ATTAATCATGAAACAGCACAAGCGCACAGTTTTGTTGTGGGTGTCAAAACACGAGAGACG 525
|| || ||||||| ||||||| |||||||||||| ||| ||| |||||||| ||||| |
Sbjct 783 ATAAACCATGAAAAAGCACAACCGCACAGTTTTGCTGTTGGTATCAAAACAAAAGAGAAG 842
Query 526 AGGAGATACAGTGAGAAGAACCAGCAAACCAAAAGAGTTGCAGGAACTCATGAGCAGGCC 585
|||||||||||||||||||||||||||| ||||| ||||||| |||||||| || | |
Sbjct 843 AGGAGATACAGTGAGAAGAACCAGCAAAACAAAACAGTTGCAACTACTCATGAACACGAC 902
Query 586 GTCTTTATC-AACGAT-AAAGGAACACAAGCTTGTGATTCTGATTTGGGTGAGGGAAGAA 643
||| ||| | || ||| || ||||| |||| | ||||||||||| |||||||||||||
Sbjct 903 GTC-TTAACTAATGATGGAA-GAACAGAAGCCCGCGATTCTGATTTCGGTGAGGGAAGAA 960
Query 644 GTGGGCAAGAATATTTCCATGAGAACAACCAGCAAAAGAAAGTGTCATCTACTGAAAGAT 703
||||||||| || |||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 961 GTGGGCAAGGATGTTTCCATGAGAATAACCAGCAAACGAAAGTGTCGTCTACTGAAAGAT 1020
Query 704 GTGAGC------TCCCTAGGACCGATAAAAGAGTGTCACACAGTTGTGGATTAGGGGAGG 757
| |||| ||||||||||| ||||||||||||||| | ||| ||||||||||||||
Sbjct 1021 GCGAGCAGGAAATCCCTAGGACCAATAAAAGAGTGTCACTCGGTTCTGGATTAGGGGAGG 1080
Query 758 GGAGAGATTGTGATGGG-AGACATATTGAAAAGAACCAGCATACCGAAACTATTGAAACT 816
|| || || | || ||| ||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1081 GGCGATATCGGGA-GGGAAGACATATTGAAAAGAATCAGCATACCGAAACTGTTAAAACT 1139
Query 817 GAAACTC-TGGGGAAGGAAGTGTT-TAAGGATATGAAGAAAAAGCGGGAACGAGGAGCGG 874
||||||| | ||||||||||| || |||||||| ||||| |||||||||| |||||| ||
Sbjct 1140 GAAACTCAT-GGGAAGGAAGT-TTCTAAGGATAGGAAGAGAAAGCGGGAAAGAGGAGTGG 1197
Query 875 AGAGAGATGGAGATGAGTTTTATTTCGCGGAGAATCAAGACAGACAGTACCAACCTGATA 934
| |||||||| |||||||| ||||| |||||||||||||||||||| | |||| ||||||
Sbjct 1198 AAAGAGATGGGGATGAGTTCTATTTGGCGGAGAATCAAGACAGACAATGCCAAGCTGATA 1257
Query 935 TGAGAAACGATGATGTGGCCTTCAATAAGCAAGAGACTTGTTTCAGCACAGATGAACAAG 994
||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1258 TGAGAAATGATGATGTGGCCTTCAATAAGCAAGCGACTGGTTTCAGCACAGTTGAACAAG 1317
Query 995 AAGATCGAAAGTCTGTATCGTCTATTTCATCTCCGGAGTCTACAAACAATGTTAAGGACC 1054
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1318 TAGAGCGAAAGTCTGTATCATCTATTTCATCTCCGGAGTCTACAAACAATGTTAACGACC 1377
Query 1055 CTAATGTAGCTTCTCAAGAGTTAGCTTTGATCATCCACCCTAAGGCTGGTGTACAAGAAC 1114
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTAATGTTGCTTTTCAAGAGTTAGCTTTGATCATCCACCCTAAGGCTGGTGTACAAGAAC 1437
Query 1115 GACCTATCGAAGCACGACCTCTT-TGCTCTGTCTCTTCAAAGAAACCATCTTTTCAACCT 1173
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1438 AACCTATCGAAGCACGACCT-TTACGCTCTGTCTCTTCGAAGAAACCATCTTTTCAACCT 1496
Query 1174 GAAAAATACGGACACAAAAGTTACCTGGAGAAGAATGGAACTACGTCTAATGATCCCGGA 1233
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 1497 GAAAAATACGGACACAAAAGTTACCTGGAGAAGAATGGACCTGCGTCTAATGATCCCGCA 1556
Query 1234 CAAAGGAAGTTTGTTTTATGCAGTGCTAAAAAACGGAAAAGACTATTTTGGACGCAGGCA 1293
||||| | | | | || |||| ||||||||| ||||||||||| ||||
Sbjct 1557 CAAAG----T--GCT--A--CA-----AAAA---GGAAAAGACGATTTTGGACGCTGGCA 1598
Query 1294 GAAGAAGAGATGCTTAGGGTTGGTGTGCAGAAATTCCCCGGCGAGAGGAATATTCCATGG 1353
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1599 GAAGTAGAGATGCTTAGGGTTGGTGTGCAGAAATTCCCTGGCGAGAGGAATATTCCATGG 1658
Query 1354 CGCAAAATCTTGGAATTTGGTCGGGATGTGTTTCACGATGAACGGGCTCCAAGCGACCTC 1413
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1659 CGCAAAATCTTGCAATTTGGTCGGGATGTGTTTCATGATGAACGGGCTCCAAGCGACCTC 1718
Query 1414 AAGGACAAGTGGAAGACGTTGAACAAAATGCCTTCTGACACGGGGAAATGGGTAAACCTT 1473
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 1719 AAGGACAAGTGGAAGACGTTAAACAAAATTCCTTCTGACACGGGGAAATGGGTAAGCCTT 1778
Query 1474 TCAACTGAAAGACAACCGAATTACTATGTGTCTGAAGTTAGTTCTGAATGA 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 TCAACTGAAAGACAACCGAATTACTATGTGTCTGAAGTTAGTTCTGAATGA 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5