BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915258
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 1118 0.0
> AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:24252158-24254849 FORWARD LENGTH=2175
Length=2175
Score = 1118 bits (605), Expect = 0.0
Identities = 686/726 (94%), Gaps = 2/726 (0%)
Strand=Plus/Plus
Query 361 GTCACGGGAAAATGGATGGCCAAGCAAAAGAAGATTTCTTTGTTGTTAGATGATCTACAA 420
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 759 GTCACGGGAAAATGGATGGCTAAGCAAAAGAAGATTTCCCTGTTGTTAGATGATCTTCAA 818
Query 421 AGCATCATGCAACACTTTTCATCTTGTCAGCATGTTCTGGTGGCTGGAAACGATGTTAAA 480
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 819 AGCATCATGCAACACTTTTCATCTTATCAGCATGTTCTGGTGGCTAGAAATGATGTTAAA 878
Query 481 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTAAGATCACCCCTCATGAAGATCCT 540
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 879 TTTGCTTATAAACTTGCAAGGGAATCAATACTTTCTATGGTCACCCCTCATGAAGATCCT 938
Query 541 CGCCAAGCAAAATCAGCTCGGAAAGAGGAGTGTGCTATCTGTTTCAACGATATCCTTGCT 600
|||||||||||| | | || |||||||||||||||||||||||||||||| ||| |||||
Sbjct 939 CGCCAAGCAAAAGCTGTTCTGAAAGAGGAGTGTGCTATCTGTTTCAACGACATCGTTGCT 998
Query 601 GAGCGCATGTTTTCTGTTGGA-AAATGCCGTCACCGCTTTTGCTTTCAATGTGTGAAACA 659
||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 999 GAGGGTATGTTTTCTGTT-GACAAATGCCGTCACCGTTTTTGCTTTCAATGTGTGAAACA 1057
Query 660 ACATGTTGAGGTGAAGCTGCTTCATGGAATGGTTCCGAAATGTCCTCACGATGGCTGCAA 719
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1058 GCATGTAGAGGTGAAGCTGCTTCATGGAATGGCTCCAAAATGTCCTCACGATGGCTGCAA 1117
Query 720 GTCTGAGCTGGTTATCGATGCCTGTGGCAAGCTTTTGACTCCAAAACTGAGTAAAATGTG 779
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1118 GTCTGAGCTGGTTATCGATGCATGTGGCAAGCTTTTGACTCCAAAGCTGAGTAAATTGTG 1177
Query 780 GCAACAAAGACTTAAAGAGAATGCGATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 839
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1178 GCAACAAAGACTTCAAGAGAATGCAATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 1237
Query 840 GAGGTGCTCGGCTTTGATGTCCAAGACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1238 GAGGTGCTCGGCTTTGATGTCCAAAACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 1297
Query 900 TGTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 1357
Query 960 CTGTAAAGTTCCGTGGCATGCAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTAA 1019
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1358 CTGTAAAGTTCCGTGGCATGGAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTGA 1417
Query 1020 CCCTCCAGCAGATGACGTGAAGCTAAAATCTCTTGCGAACAATAAGATGTGGCGCCAATG 1079
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 1418 GCCTCCGGCAGATGATGTGAAGCTCAAATCTCTTGCAAATAATAAGATGTGGCGCCAGTG 1477
Query 1080 TGGCAA 1085
||||||
Sbjct 1478 TGGCAA 1483
Score = 473 bits (256), Expect = 1e-132
Identities = 331/366 (90%), Gaps = 9/366 (2%)
Strand=Plus/Plus
Query 2 TGCGGAAAGCAAGTATGGGTTCCGATTCCGAATATGCTTTTCGGTTACAGATGGAGGAGG 61
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 55 TGCGGAGAGCAAGTATGGATTTCGATTCCGAGTATGCTTTTCGGTTACAGATGGAGGAGG 114
Query 62 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCTCAACGACCACCTTCTCCTCCGA 121
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 115 CACTCGCGGCTTCTCTATCTTCTCAATCTCGCACTCCGCAACGACCACCGTCACCTCCGA 174
Query 122 TTGTGGCT-CGGTGTGGTATCGCT-ATCGTTGAAAACGATCGGAACGGTTCGACGACGGC 179
|||||||| || |||||| || || |||||||||||| ||| |||| ||||| ||||||
Sbjct 175 TTGTGGCTACG-TGTGGTGTC-CTTATCGTTGAAAACAATCCAAACGATTCGAAGACGGC 232
Query 180 TaaaaaaaGTAGCGGTTACGGTTTCGATTTTAGGAGAGCCATCGGCGGAGGAAACTCTAA 239
|||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 233 GAAAACAAGTAGCGGTTACGGTTTCGATTTTAAGAGAGCCGTCGGCGGTGGAAACTCTAA 292
Query 240 AGGCAAA-GGCAAAACCAACGAGTCTGTCACTGGTGTACGTACAGATGAACCAAACCCTA 298
|| |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 293 AG-CAAAAGGCAAAACCCACGAGTCTGTCACTGGTGTACGTACAGATGAACGAAACCCTA 351
Query 299 ACATTGGGCTTGGTAACTCCCGGAGTAC-T-T-CCGGACACGATAATATGAAACCCTTGC 355
|||||||||| ||||||||||||||||| | | ||||||| | |||| |||||||||||
Sbjct 352 ACATTGGGCTCGGTAACTCCCGGAGTACGTCTACCGGACATGGCAATACGAAACCCTTGC 411
Query 356 CGCAGG 361
| ||||
Sbjct 412 CTCAGG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5