BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915270
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47660.1 | Symbols: | Homeodomain-like superfamily protein ... 1770 0.0
> AT5G47660.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:19313008-19314636 FORWARD LENGTH=1197
Length=1197
Score = 1770 bits (958), Expect = 0.0
Identities = 1123/1199 (94%), Gaps = 25/1199 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTTCTCGCCGGCGACTGTCGGAAACGAGTCGGCGACGACTTTGACGAAGATGTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1 ATGGAACTTCTCGCCGGCGACTGTCGGAAACGAGTCGGCGACGACTTTGAGGAAGATATT 60
Query 61 AACCCATTCGATGGCTCAGATGGTGGTTGCGGGTGGATGTACGGTAGCCGTC-AA----- 114
|||||||||||||| || || ||||||||||||||||||||||||| ||||| ||
Sbjct 61 AACCCATTCGATGGTTCGGACGGTGGTTGCGGGTGGATGTACGGTACCCGTCAAATGGGT 120
Query 115 TC---GGGAAACGACGACGCTTTGGCTACGCTCGCAGACTTGGCTTCGCCTCCTCAGAAA 171
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTAACGGAAACGACGACGCTTTGGCTACGCTCGCAGACTTGGCTTCGCCTCCTCAGAAA 180
Query 172 TTGAAACCTATCAGGTGTGGCGTTAAGC-T---TC--CGTCGGAGGATCGACATCCTCTT 225
||||||||||| |||||||||||||||| | || |||||||||||||||||||||||
Sbjct 181 TTGAAACCTATAAGGTGTGGCGTTAAGCTTCCGTCGTCGTCGGAGGATCGACATCCTCTT 240
Query 226 GATATTCTCGCCGGAACCCTAGACAGACTGCCGGAGATGGGGTTTGGCTGCTTCGAAGCT 285
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 241 GATATTCTCGCCGGAACCCTAGATAGGCTGCCGGAGATGGGTTTTGGCTGCTTCGAAGCT 300
Query 286 CCTTTGGGATCCAAGATTGCTGACGTGGAGCAAAGTGGTCAATTGACTCGTGGGTTTTCA 345
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CCTTTGGGATCGAAGATTGCTGACGTGGAGGAAAGTGGTCAATTGACTCGTGGGTTTTCA 360
Query 346 AAGGATGATGATGATTCTC-T--TCCGCTTCAAATGGAGTTTCAAGCTCGAAATCGCATC 402
||||| || |||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAAGAGGATGATTCTCTTCCTCCTCTTCAAATGGAGTTTCAAGCTCGAAATCGCATC 420
Query 403 TCTTGGGATGGTCTCTCTCTCAGCTCCTCTGTTGATAGC-G--ATAGCGACTCTTCCTCG 459
||||||||||||||||||||||||||||||||||||||| | |||| ||||| || ||
Sbjct 421 TCTTGGGATGGTCTCTCTCTCAGCTCCTCTGTTGATAGCAGCGATAGTGACTCATC-TCC 479
Query 460 -GACGTTCGCAAGACCGTCACTGGTAAAAGAAAGCGGGAAACAAGGGTAAAGCTGGAGCA 518
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGACGTTCGCAAGACCGTCACGGGTAAAAGAAAGCGGGAAACAAGGGTAAAGCTGGAGCA 539
Query 519 TTTCTTGGAGAAG-TTGGTGGGGAGTATGATGAAGCGGCAGGAGAAGATGCATAACCAGT 577
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TTTCTTGGAGAAGCTTG-TGGGGAGTATGATGAAGCGGCAGGAGAAGATGCATAATCAGT 598
Query 578 TGATTAAGGTGATGGAGAAGATGGAAGGGGAGAGAATACGCCGTGAGGAAGCTTGGAGGC 637
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 TGATTAATGTGATGGAGAAGATGGAAGTGGAGAGAATACGCCGTGAGGAAGCTTGGAGGC 658
Query 638 AACAGGAAATCGAGAGGATGATACAGAATGAAGAGGCACGGAAGCAAGAGTTGGCACGCA 697
||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 659 AACAGGAAACCGAGAGGATGACACAGAATGAAGAAGCACGGAAGCAAGAGATGGCACGCA 718
Query 698 GCTTGTCTCTCATCTCTTTCATCAGAAGTGTTATTGGTGACGAGATCGAGATCCCTAAAC 757
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 ACTTGTCTCTCATCTCTTTCATCAGAAGTGTTACTGGTGACGAGATCGAGATCCCTAAAC 778
Query 758 ACTTTGAATTCCCGCAACCACTCCAGCAGATTCTTCCCGAACAATGTAAAGACGAGAAAT 817
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 AGTGTGAATTCCCGCAACCACTCCAGCAGATTCTTCCGGAACAATGTAAAGACGAGAAAT 838
Query 818 GTGAACCCGCTCAGACACAAAGAGAGATAAAGTTTAGGTATTCAAGCGGCAGTGGGAGTA 877
||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| || |
Sbjct 839 GTGAATCCGCTCAGAGAGAAAGAGAGATAAAGTTTAGGTACTCAAGCGGCAGTGGCAGCA 898
Query 878 GCGGGAGAAGGTGGCCGCAAGAGGAAGTGCAGGCATTGATAAGTACAAGAAGCGATGTAG 937
| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 899 GTGGTAGAAGGTGGCCGCAAGAGGAAGTGCAGGCATTGATAAGTTCGAGAAGCGATGTGG 958
Query 938 AAGAGAAGACGGGGATCAACAAGGGAGCGATTTGGGATGAGATATCAGCAAGAATGAAGG 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 AAGAGAAGACGGGGATCAACAAGGGAGCGATTTGGGATGAGATATCAGCAAGAATGAAAG 1018
Query 998 AAAGAGGGTACGAAAGATCTGCTAAAAAGTGTAAGGAGAAGTGGGAGAACATGAACAAGT 1057
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAAGAGGGTACGAAAGATCTGCGAAAAAGTGTAAGGAGAAGTGGGAGAACATGAACAAGT 1078
Query 1058 ATTACAGGAGAGTGACGGAAGGTGGGGGGAAACAGCCTGAGCACAGCAAGACTCGCTCAT 1117
| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 ACTATAGGAGAGTGACGGAAGGTGGGCAGAAACAGCCTGAGCACAGCAAGACTCGCTCAT 1138
Query 1118 ACTTTGAGAAACTTGGAAGTTTTTACAAGACCAATTCCTCGGGAGAGAGGGAAAAATGA 1176
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 ACTTTGAGAAACTTGGAAATTTTTACAAGACCATTTCCTCGGGAGAGAGGGAAAAATGA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5