BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915275
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1749 0.0
> AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302190-19304816 REVERSE LENGTH=2066
Length=2066
Score = 1749 bits (947), Expect = 0.0
Identities = 1033/1076 (96%), Gaps = 0/1076 (0%)
Strand=Plus/Plus
Query 221 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGCAGTTTTTAACAAAAGTAACA 280
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 633 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGTAGTATTTAATAAAAGTAACA 692
Query 281 GCAGCCTTCAGGGATCACCTGGCCCATCAACCACCAAGAAGATCTTTGTGGGAGGTTTGG 340
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 693 GCAGCCTTCAGGGATCACCTGGCCCATCAAACTCCAAGAAGATCTTTGTGGGAGGTTTGG 752
Query 341 CTTCATCGGTGACTGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 400
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CATCATCCGTGACAGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 812
Query 401 ATGTTGTGGTGATGTATGACCACAGAACTCAGCGGCCGAGAGGCTTTGGGTTCATCTCAT 460
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 813 ATGTTGTGGTGATGTATGACCACAGAACCCAGCGGCCTAGAGGCTTTGGGTTCATTTCAT 872
Query 461 ATGACTCTGAGGACGCTGTTGACAAAGTGCTGCAGAAGACATTCCACGAACTCAATGGTA 520
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 873 ATGACTCTGAGGAAGCTGTTGACAAAGTACTGCAGAAGACATTCCACGAACTCAATGGTA 932
Query 521 AGATGGTGGAGGTCAAACTCGCTGTTCCTAAGGAAATGGCTCTCAACACAATGCGGAACC 580
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 933 AGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGATATGGCTCTCAACACAATGCGGAACC 992
Query 581 AAATGAATGTAAATAGCTTTGGCAGTAGTAGAATCAGTACATTGCTGAACGAGTACACCC 640
|||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct 993 AAATGAATGTAAATAGCTTTGGCACTAGTAGAATCAGTTCATTACTGAATGAGTACACCC 1052
Query 641 AAGGATTCAGCCCGACTCCAATCTCTGGCTATGGAGTAAAACCTGAAGTTAGGTACAGTC 700
| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1053 AGGGATTCAGCCCGAGTCCAATCTCTGGTTATGGAGTGAAACCTGAAGTTAGGTACAGTC 1112
Query 701 CAGCAGTAGGTAATAGGGGCGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 760
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CAGCAGTAGGTAATAGGGGAGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 1172
Query 761 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGCGGAGGCTTTGGACGAC 820
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1173 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGTGGAGGCTTTGGACGAC 1232
Query 821 CCTTTAGCCCTGGGTATGCTGCGAGTCTCGGCAGATACGGTAGCCAGATGGAAACGGGAG 880
||||||||||||| |||||||||||||||||||| | ||||||||| ||||| ||||||
Sbjct 1233 CCTTTAGCCCTGGATATGCTGCGAGTCTCGGCAGGTTCGGTAGCCAAATGGAGTCGGGAG 1292
Query 881 GAGCTAGTGTCGGGAACGGTTCTGTGCTAAATGCAGCAACAAAGAACCATTTATGGGGAA 940
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1293 GAGCTAGTGTTGGGAACGGTTCTGTCCTAAATGCAGCACCAAAGAACCATTTATGGGGAA 1352
Query 941 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1412
Query 1001 CTGGAACGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGCTGCACGTGGACGTA 1060
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1413 CTGGAATGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGTTGCACGTGCACGCA 1472
Query 1061 GTAGCTACCCCGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GTAGCTACCACGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1532
Query 1121 GTGGTTACAGCAGTGGCTCAAGCAGCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1180
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1533 GTGGTTACAGCAGCGGCTCAAGCATCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1592
Query 1181 GGCTTTCTCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGAGCATTGGACTTCATGT 1240
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1593 GGCTTTCGCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGACCATTGGACTTCATGT 1652
Query 1241 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1708
Score = 377 bits (204), Expect = 1e-103
Identities = 216/222 (97%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 406
Query 61 CGTCTTCGTGAGTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CGTCTTCGTGACTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 466
Query 121 CGTGCCACTGGTCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTATTGTTGCT 180
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 467 CGTGCCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTAATGTTGCT 526
Query 181 GAGCGAGTCGTTTTGCTTAAACATATCATTGATGGTAAAATT 222
|| ||||||| ||||||||||||||||||||||||||||||
Sbjct 527 GAAAGAGTCGTCTTGCTTAAACATATCATTGATGGTAAAATT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5