BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915279
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47590.1 | Symbols: | Heat shock protein HSP20/alpha crysta... 1050 0.0
> AT5G47590.1 | Symbols: | Heat shock protein HSP20/alpha crystallin
family | chr5:19297817-19299152 REVERSE LENGTH=976
Length=976
Score = 1050 bits (568), Expect = 0.0
Identities = 729/804 (91%), Gaps = 21/804 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGAGCCAAAGGTAGAATTCAGGGACATGTCAAGAATTCCTAAAGTTCGAGAGGGA 60
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 54 ATGGGTGAGACAAAGGCAGATTTCAGGGACATGTCAAGAATTCCTAAAGTTCGAGAGGGG 113
Query 61 TTCTACGCGACGAACAATCAGTTTCAGAAAGCGGGTCCAAAGGGTTTCATTGAAGTGAAG 120
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 114 TTCTACGCGACGAACAATCAGTTTCAGAAAGCGGGTCCAAAGGGTTTCGTTCAAGTGAAG 173
Query 121 GTTCTGGAGAATGACAATCTCTATGTACGTGTCGACTTGCCTGGTGTTCCAGACGACGGC 180
||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 174 GTTCTGGAGAACGACAATCTCTACGTGCGTGTCGACTTGCCTGGTGTTCCAGACGACGCC 233
Query 181 GTTCATC-ACAGAGTTGACGCGGTGAGACAAAAGGTTGTCTTTTTCTCCGGCGAGACTCT 239
|||| | ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 234 GTTC-GCTACAGAGTTGACGCCGTGAGACAAAAGGTTGTCTTTTTCTCCGGTGAAACTCT 292
Query 240 ---CAATC-CCAAGGAAGGCGGCATTCGTGAGTACTCTGGAACCGCTGGTCTTGGCTGTG 295
||| | ||||||||| | | ||| ||||||||||||||||||| ||||||||||
Sbjct 293 GAACAA-CGGCAAGGAAGG-TG--TGCGTCAGTACTCTGGAACCGCTGGGCTTGGCTGTG 348
Query 296 ACTGCTGCGAGATCACAGGCGTCGTCGATGCCAAAATGAAAGATGGAGTCTTGAGGATGA 355
|||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 349 ACTGCTGCGAGATCACAGGCGT-G--GATGCCAAAATGAAAGATGGAGTTTTGAGGATGA 405
Query 356 TTCTCTCAAGGGTCAAGGTTGTGAACAAGG----A-TCAAC-ACAACAACAAGTGTACCC 409
||||| |||||||||||||||||| ||||| | |||| |||||||||||||||| |
Sbjct 406 TTCTCACAAGGGTCAAGGTTGTGAGCAAGGCTCAAGACAACAACAACAACAAGTGTACTC 465
Query 410 TCACTGTGCCTCCTTTCT-CAGGCCAATCCGGAATACGCTTGGAGGAACACCCGTGTCTG 468
|||||||||||||||| | |||| ||||||||||||||||||||||| || |||||||||
Sbjct 466 TCACTGTGCCTCCTTT-TACAGGTCAATCCGGAATACGCTTGGAGGATCATCCGTGTCTG 524
Query 469 GTGAATGGTCGCAAGGGAGCATTATTTGGGAAGGCAACAGCGGGAGGAGGGGCTTTCTTT 528
||| |||||||||||||||| || ||||| | ||| |||||||||||||||| ||||
Sbjct 525 GTGTCTGGTCGCAAGGGAGCACTAATTGGGGTGACAAAAGCGGGAGGAGGGGCTCACTTT 584
Query 529 GCAGTGGACTTGCCAGGTGTTAGTCCGGATGATGTAGAAGTGTCTGCTAATGAAAATGAA 588
||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||| |||
Sbjct 585 GCAGTGGACATGCCAGGTGTTAGTCCGGATGATGTGGAAGTGTATGCTGATGAAAAGGAA 644
Query 589 ATCAGATTCAGAGCTGAGATCAAGAACGTGTATGAGCACGATGAGAGCGGTCGAACCTAC 648
|||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 645 ATCAGATTCAAAGCTGAGATCAAGGACGTGTATGAACACGATGAGAGCGGTCGAACCTAC 704
Query 649 CTCGGAAGCGTCCAGAGTCCTTTTCCCTCTTTAATTTCGAACAACACCATCGCTTGGGAT 708
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 705 CTCGGAAGCGTCCAAAGTCCTTTTCCCGCTTTAATTTCGAACAACACCATCGCTTGGGAT 764
Query 709 GCAGAATTTGGTGTTCTCAGGATTGCTGTCGTATCTCCTGGCGACATGGCCATCATCAAC 768
|||||||||||||||||||||||||||||| || |||||| ||||||| ||| |||||||
Sbjct 765 GCAGAATTTGGTGTTCTCAGGATTGCTGTCATACCTCCTGACGACATGACCACCATCAAC 824
Query 769 AACAAAAGAAGCCCTATTGAGTGA 792
|||||||||| ||||||||| |||
Sbjct 825 AACAAAAGAAACCCTATTGAATGA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5