BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915292
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47470.1 | Symbols: | Nodulin MtN21 /EamA-like transporter ... 1740 0.0
> AT5G47470.1 | Symbols: | Nodulin MtN21 /EamA-like transporter
family protein | chr5:19254598-19256378 FORWARD LENGTH=1095
Length=1095
Score = 1740 bits (942), Expect = 0.0
Identities = 1041/1090 (96%), Gaps = 2/1090 (0%)
Strand=Plus/Plus
Query 4 tttttttGTGTGAATTTGTATCGATCGGTGCTTAATCTCCTAGAGGAGAGGATGAAGAAG 63
||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 7 TTTTTTTGTGTAAATTTGTATCGATCGGTGCTCAATCTCCTTGAGGAGAGGATGAAGACG 66
Query 64 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GAGATGATAGAAGAGATGGTGATAGTAGGAGGTTTAGTAATGGTTCAATTTGTATACGCA 126
Query 124 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTTGGTCTTGGCCCTTTCACCATTGTC 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 127 GGCAATTCTTTGCTCATGAGTTATTTGATGTCACTCGGTCTTGGCCCTTTCACCATTGTC 186
Query 184 ATCTTCTCTACCTTTGCCACTTTCATAATTCTCTCGCCTTTCGCCATCCTCTTCGAAAGG 243
||||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 187 ATCTTTTCTACATTCGCCACTTTCATAATCCTCTCCCCTTTCGCCATTCTCTTCGAAAGG 246
Query 244 AAGCAATGGCCAAATGAGCTTAGTTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 247 AAGCAATGGCCAAATGAGCTTAGCTTGAGGCTGATTGGTAAGCTAGTTTTGATCTCCTTT 306
Query 304 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GCAGGGGTTACTCTGTTCCAGTCTCTGTTTCTAGAAGGAATCAGGTTGACATCACCAGCA 366
Query 364 ATGGCAACAGCGATGCCTAATCTCGCTCCTGGTCTTATTTTCTTCCTCGCTTGGATCGTT 423
||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||
Sbjct 367 ATGGCAACAGCGATGCCAAATCTTGCTCCTGGTCTCATTTTTTTCATCGCTTGGATCGTT 426
Query 424 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAACTGAAGATCTTAGGGACATTG 483
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 427 GGGTTAGAGAAGATGAATCTGAAATGTGTGTACAGCAAGTTGAAGATCTTAGGGACATTG 486
Query 484 TTATGTGTATTCGGCGCTTTAACTATGAGCATAATGCACAGCACTTCTATCAGTCATAAA 543
|| || ||||| ||||||||| |||||||| |||||||||||||||| |||||||| |||
Sbjct 487 TTGTGCGTATTTGGCGCTTTAGCTATGAGCGTAATGCACAGCACTTCGATCAGTCACAAA 546
Query 544 GAAGAAGATGATACTCCAGTATTCGTCTTTGATAGAGATAAGGTCGTCGGATGTATCTAC 603
||||||||||| |||||| |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 547 GAAGAAGATGACACTCCAATATTCGTCTTTGATCGAGACAAGGTCGTTGGATGTATCTAC 606
Query 604 CTTCTTGGAGCCGTCTTTGTTTTATCTACCAACGTTGTTCTTCAGGCGTCAACATTGGCA 663
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 607 CTTCTTGGAGCCGTCTTTGTTTTATCCACCAACGTCGTTCTTCAGGCGTCAACGTTGGCA 666
Query 664 GAGTTTCCGGCACCGATATCCTTAAGTGCAATAACGGCATTACTAGGAATGTTGATAACA 723
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 667 GAGTTCCCGGCACCGATATCGTTAAGTGCAATAACGGCATTACTAGGAGTGTTGATAACA 726
Query 724 ACGGTGGTACTACTACTACAAAACCGAAAGGCAAAAGTACTTAG-CAGTTCATTTGTTAG 782
||||||||||||||| ||||||||||||| ||||||||||| | ||||||||| ||||
Sbjct 727 ACGGTGGTACTACTATTACAAAACCGAAAAACAAAAGTACTT-GCCAGTTCATTAATTAG 785
Query 783 TTTCGGTAACCTCGTTGGTTACTCTCTCCTGGCAGGGACAGTGAGTGGAGCATGTGTTAG 842
||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 786 TTTCGGTAACCTCGTTGGTTATTCTGTCCTGGCAGGGGCAGTGAGTGGAGCATGTGTTAG 845
Query 843 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTGGTTTCAATGTTTAGTCCTTT 902
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 846 CTTTAATGGATGGGCCATGAAGAAACGTGGACCGGTTTTCGTTTCAATGTTTAGTCCTTT 905
Query 903 CGCTACCGTTATTTCGGTTGCTTTCTCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 962
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 906 CGCTACCGTTATTTCGGTTGCTTTCGCCGTTTTGACATTAGGAGAGTCCGTTAGCCTTGG 965
Query 963 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AAGTGTGGGAGGGATGGTGTTGATGTTCGTAGGGCTATACCTTGTGTTATGGGCTAAAGG 1025
Query 1023 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CAAAGAAGGGTTCTCTGAAATTGAGAGTTTTGAGAGTGAGTTCGACTCTAAGAAGCCTCT 1085
Query 1083 TTTGTCTTGA 1092
||||||||||
Sbjct 1086 TTTGTCTTGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5