BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915302
Length=3165
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3602 0.0
AT5G47420.1 | Symbols: | Tryptophan RNA-binding attenuator pro... 1354 0.0
> AT5G47400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: endomembrane system; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:19229162-19232586 FORWARD LENGTH=2589
Length=2589
Score = 3602 bits (1950), Expect = 0.0
Identities = 2186/2301 (95%), Gaps = 12/2301 (1%)
Strand=Plus/Plus
Query 1 ATGCTTCCACACTCGTACACCGTCGATTCGCTTTCGCAATCTCAAGACCTAGCTTCGGCT 60
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 202 ATGCTTCCACACTCCTACACCGTCGATTCGCTTTCGCAATCACAAGACCTAGCTTCAGCT 261
Query 61 ATACTCTCAGCTTCCACGCCGTCGAATATCTCCGCTGCTTGTTCTTCCGTCGAATCGTTT 120
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 262 ATACTCTCAGCTTCCACGCCGTCGAGTATCTCCGCTGCTTGCTCTTCCGTCGAATCGTTT 321
Query 121 CTTCACTCACATACGCCTGATCAGTGTCGTCATTTCTTCTCTGTTACTTTTCCGAGTTTA 180
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 322 CTTCAGTCGCATACGCCTGATCAGTGTCGCCATTTCTTCTCTGTTACTTTTCCGAGTTTA 381
Query 181 ATTTGTAAGATCTTCGGTTTCGGCGACGCGACCGCGGCATCTCCGGCACCGTCTTCGTCG 240
|| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 382 ATCTGTAAGATCTTCGGTTTCGGCGACACGACCGCGGCATCTCCGGCACAGTCTTCTTCG 441
Query 241 CTGCGGCCGAACGGTTGGATCGATGTAATCTCGGCGGCTAACGATTTGGATTTAGCGGAG 300
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 442 CTGCGACCGAACGGTTGGATCGATGTAATCTCGGCGGCCAACGATTTGGATTTAGCGGAG 501
Query 301 AGAGTATTTAATCTCTTATCACCC-AGTGGAATACTCATGAGCTCAATCTTTGCTGTTGA 359
||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 502 AGAGTATACAATCTCTTATC-CCCTAGTGGAATACTCATGAGCTCAATCTTCGCTGTTGA 560
Query 360 TAAGTTAGCTCTTGTTAAGTACGTTTTTCCGACCGAACGTTTACCGGAATATGCTCGATT 419
||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||| ||||
Sbjct 561 TAAATTAGCTCTTGTTAAGTATGTTTTCCCGACGGAACGTTTACCGGAGTATGCTAGATT 620
Query 420 CATGCTCTCCAGCGAGAAGGATCGAAGCGCCTTATCTAATCTGTGTCCCTTTTTGAAAGG 479
|||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||
Sbjct 621 CATGCTCTCCAGCGAGAAGGATCGAATTGCGTTATCGAATCTGTGCCCCTTTTTGAAAGG 680
Query 480 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTATGAAGTTAGGCTAAATGTTTTTGA 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 681 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTGTGAAGTTAGGCTAAATGTTTTTGA 740
Query 540 GTATTACATGTTTTGGCTCTCTTATTATCCGGTTTGTAGAGGAAACAATGAGAGTTCAGC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 741 GTATTACATGTTTTGGCTCTCTTATTATCCAGTTTGTAGAGGAAACAATGAGATTTCAGC 800
Query 600 --TG----TGAATCCTATCCAAAAGAGAAAGATGTTTAAGCTAGAGAATTGGACACTTAT 653
|| |||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 801 TGTGAATCTGAATCCTATCCAAAAGAGAAACAAGTTTAGGCTAGAGAATTGGACACTTAT 860
Query 654 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCACAAATTGGAGTGTAATCTCTA 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 861 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCAGAAATTGGAGTGTAATCTCTA 920
Query 714 CTTAAGGCTTCTTTACTCTTATCTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCACA 773
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 921 CATAAGGCTTCTTTACTCTTATTTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCTCA 980
Query 774 CCAGCCTTATCGTAGCTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 833
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CCAGCCTTATCGTAGTTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 1040
Query 834 AAGAGCTGAGTTCTTGGTGAATGTGTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 893
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1041 AAGAGCTGAGTTCTTGGTGAATGTTTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 1100
Query 894 ACCGTTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 953
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACCATTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 1160
Query 954 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTTAAGTTGCTTGTCAAGTATCT 1013
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1161 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTGAAGTTGCTTGTCAAGTATCT 1220
Query 1014 GAATTTGAGCTGGGTTACAAGTGGTGTTGGGAGTGAAAGCTACATTGAGTATGGCGAGAG 1073
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1221 GAATTTGAGTTGGGTTACAAGTGGTGTTGGGAGTGAAAACTACATTGAGTATGGCGAGAG 1280
Query 1074 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATTCCATGTTGCGAATTTGAGCCTTAG 1133
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||
Sbjct 1281 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATCCCATGTCGCGAATTTGAGCCTCAG 1340
Query 1134 GCCTCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTACCGCTATATATTGAGGAG 1193
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1341 GCCGCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTATCGTTATATATTGAGGAG 1400
Query 1194 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTCTTCACTATCTG 1253
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1401 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTGTTCTCCATCTG 1460
Query 1254 GGTTATGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGATCTTGAAGCTGC 1313
||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 1461 GGTTACGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGTTTTTGAACCTGC 1520
Query 1314 TTTAAATGGATCTGTAAAAGATGTGAAAAAGGAAGAGTCTTATGAATCACGCGTTTGTGG 1373
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1521 TTTAAGTGGATCTGTAAAAGATATGAAAAAGGAAGATTCTTATGAATCACGCGTTTGTGG 1580
Query 1374 ATACACGTCTTTGTGGCAGAGCTATGTTATATCCAATTATCTCTACTACAGTTCTCTGGT 1433
||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1581 ATACACGCCTTTGTGGCAGAGCTATGTGATATCCAATTATCTCTACTATAGTTCTCTGGT 1640
Query 1434 CATGCATTTTATTGGCTTTGCGCACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1493
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1641 CATGCATTTTATTGGCTTTGCACACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1700
Query 1494 GATGGTTCTGAAGGTGATGAGTACATTAACACCGTCAAAAGAGCTTTTGATTCTGATGAA 1553
||||| ||| |||||||||||||| || ||| ||||||||||||||||| ||||||||||
Sbjct 1701 GATGGCTCTTAAGGTGATGAGTACGTTGACATCGTCAAAAGAGCTTTTGGTTCTGATGAA 1760
Query 1554 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1820
Query 1614 ATTGTCTAGATTTGCTCCATCTATCCGTGAGCAATTGAAGGATTGGGAAGATGGGTTGTG 1673
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1821 ATTGTCTAGATTTTCTCCATCTATCCGTGAGCAGTTGAAGGATTGGGAAGATGGGTTGTG 1880
Query 1674 TGAGAGCAACGCTGATGGTTCATTCTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1733
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1881 TGAGAGCAACGCTGATGGCTCATACTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1940
Query 1734 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGAGCAGAAGC 1793
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1941 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGGGCAGAAGC 2000
Query 1794 CGAACTGCAAACTGTATCCGAGAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 1853
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2001 CGAACTGCAAACTGTATCCGATAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 2060
Query 1854 AAAGTCAGCGGTTTCAAACTTCTTTGGCGGGCATGTCATAAAACCAATCGCTTTTTCCCT 1913
||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2061 AAAATCAGCGGTTTCCAACTTCTTTGGCGGGCATGTCGTAAAACCAATCGCTTTTTTCCT 2120
Query 1914 AGAGCCGGACCATCCTCA-AAAAATCCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGCA 1972
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 2121 AGAGCCGGACCATCCTCAGAAAAA-CCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGTA 2179
Query 1973 ACCAAATAGCAGG-GATTGTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTTTCAGAA 2031
|||||| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2180 ACCAAACAGCAGGCGGT-GTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTGTCAGAA 2238
Query 2032 GACGAGGTTGCATGGATGGCTAAACTGCTAATCAACATCTCTATCTGGCTCAATGAACGC 2091
||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2239 GACGAGGTTGCATTGATGGCTAAACTGCTAATCAACATGTCTATTTGGCTCAATGAACGC 2298
Query 2092 CTCGGGCTGAACAAATCTGAGACCAACAAAGAAAAGAAAGAGAATTCAGAGTCAGTGTCA 2151
||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| |||
Sbjct 2299 CTCGGGCTGAACAAATCTGAGACGAGCAACGACAAGAAAGAGAATTCAGAGTCAGTATCA 2358
Query 2152 TATGTAGACATATCAGGGGAAGATGTGGGAAACGTTGGTGGACCTGGAGATGCTGCGAGG 2211
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2359 TATGTAGATGTATCAGGGGAAGATGTGGGAAACGTTGCAGGACCTGGAGATGCTGCGAAG 2418
Query 2212 ATGATGTTGCGAGGGTTGGTGATGGTATGTGGTACGGTGTTGCAGCTGATGAGAAGATTC 2271
||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2419 ATGCTGTTGCGAGGGATGGTGATGGTATGTGGCACAGTGTTGCAGCTGATGAGAAGATTC 2478
Query 2272 GGGGTTCGAGTAAATCTTCGG 2292
||| ||||||| |||||||||
Sbjct 2479 GGGATTCGAGTCAATCTTCGG 2499
> AT5G47420.1 | Symbols: | Tryptophan RNA-binding attenuator protein-like
| chr5:19232836-19235059 FORWARD LENGTH=1247
Length=1247
Score = 1354 bits (733), Expect = 0.0
Identities = 829/876 (95%), Gaps = 4/876 (0%)
Strand=Plus/Plus
Query 2292 GATCATCTCTGCGGTCTTCACCACTATGGCCGCACCGtttttttCAACTCCATTTCAGCC 2351
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 153 GATCTTCTCTGTGGTCTTCACCACTATGGCCGCTCCGTTTTTTTCAACTCCATTTCAGCC 212
Query 2352 TTACGTCTACCAGAGTCAACAAGATACTATTACACCTTTCCAGATTTTGGGTGGTGAATC 2411
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 213 TTATGTCTACCAGAGTCAACAAGATACTATTACACCGTTCCAGATTTTGGGTGGTGAATC 272
Query 2412 CCAAGTTGTTCAGATAATGTTAAAGTCGGAGGAGAAAGTCATCGCTAAGCCTGCTTCCAT 2471
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 273 CCAAGTTGTTCAGATAATGTTAAAGTCAGAGGAGAAAGTCATTGCTAAGCCTGCTTCCAT 332
Query 2472 GTGCTATATGTCTGGGTCCATCGAGATGGAAAATACATACACTCCTGAACAAGAAGTTGG 2531
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GTGCTACATGTCTGGCTCCATCGAGATGGAAAATACATACACTCCTGAACAAGAAGTTGG 392
Query 2532 AGTTTTGCAGTGGATTTTGGGCAAGAGTGTAAGCAGTGTACTTCTTAGGAATACTGGGCA 2591
|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 393 AGTTCTGCAGTGGATTTTGGGCAAGAGTGTAAGCAGTGTTGTTCTTCGGAATACTGGGCA 452
Query 2592 AAACGATGGATTTGTGGGCATTGCTGCACCTTATTTGGCTAGGATTCTCCCGATCGATTT 2651
|||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 453 AAACGACGGGTTTGTTGGTATTGCTGCACCTTATTTGGCTAGGATTCTCCCGATTGATTT 512
Query 2652 GGCAATGTTTGGAGGTGAGATCTTATGCCAGCCAGATGCATTCCTTTGTTCCGTCCATGA 2711
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 513 GGCAATGTTTGGAGGTGAGATCTTATGCCAGCCAGATGCATTCCTTTGTTCTGTCCATGA 572
Query 2712 TGTGAAGATTGTCAACTCTGTTGACCAGAG-GCCAAGAAACATTGTTGCCGCTGGTGCAG 2770
||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 573 TGTGAAGGTTGTCAACTCCGTTGACCAGAGAG-CAAGAAACATTGTTGCCGCTGGTGCAG 631
Query 2771 AGGGATTTCTGAGACAACGCCTATCTGGACAAGGTCTTGCTTTCATCCTCGCAGGTGGCT 2830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGGGATTTCTGAGACAACGCCTATCTGGACAAGGTCTTGCTTTCATCCTCGCAGGTGGCT 691
Query 2831 CTGTTGTACAAAAAGTTCTGGAGGTAGGAGAAGTTCTCTCCGTTGACGTGTCCTGTATCG 2890
||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
Sbjct 692 CTGTTGTACAAAAAGTTCTGGAGGTAGGAGAAGTTTTCTCCATTGACGTTTCCTGTATTG 751
Query 2891 CTGCTCTCACACCCTCAATCGATGTCCAAATAAAAAACAATGCTCCTTTGAGACGAGCAG 2950
|||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 752 CTGCTCTCACACCCTCTATCGATGTCCGAATCAAAAACAATGCTCCTTTTAGACGAGCAC 811
Query 2951 TATTCGGGGGTGATAACGTAGTAATGGCGACTCTAACGGGGCCAGGCATTGTCTTTATCC 3010
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 812 TATTCGGGGGTGATAACGTAGTAATGGCGACTCTAACGGGGCCTGGCATTGTCTTCATTC 871
Query 3011 AGAGCTTACCGTTTCATCGGCTCTCGCAGCGTATTGCAAGGTCGGTGACGTCGCCAAACA 3070
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 872 AAAGCTTACCGTTTCATCGGCTCTCGCAGCGTATTGCAAGGTCGGTAACGTCGCCAAACA 931
Query 3071 TGAGAGAAAATCCAAAACTGTTGATACAGATAG-TGATATTTGCATTCCTCGCATACGCA 3129
||||||| ||||||||| || |||||||||||| | |||||||| ||||| ||||||||
Sbjct 932 TGAGAGAGAATCCAAAATTGCTGATACAGATAGCT-ATATTTGCGTTCCTAGCATACGCT 990
Query 3130 GTGATTCTATCATCGTTGATCTTAACCGAAGTTTGA 3165
|||||| | |||||||||||||||||||||||||||
Sbjct 991 GTGATTTTGTCATCGTTGATCTTAACCGAAGTTTGA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157423867134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5