BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915302 Length=3165 Score E Sequences producing significant alignments: (Bits) Value AT5G47400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3602 0.0 AT5G47420.1 | Symbols: | Tryptophan RNA-binding attenuator pro... 1354 0.0 > AT5G47400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19229162-19232586 FORWARD LENGTH=2589 Length=2589 Score = 3602 bits (1950), Expect = 0.0 Identities = 2186/2301 (95%), Gaps = 12/2301 (1%) Strand=Plus/Plus Query 1 ATGCTTCCACACTCGTACACCGTCGATTCGCTTTCGCAATCTCAAGACCTAGCTTCGGCT 60 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 202 ATGCTTCCACACTCCTACACCGTCGATTCGCTTTCGCAATCACAAGACCTAGCTTCAGCT 261 Query 61 ATACTCTCAGCTTCCACGCCGTCGAATATCTCCGCTGCTTGTTCTTCCGTCGAATCGTTT 120 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 262 ATACTCTCAGCTTCCACGCCGTCGAGTATCTCCGCTGCTTGCTCTTCCGTCGAATCGTTT 321 Query 121 CTTCACTCACATACGCCTGATCAGTGTCGTCATTTCTTCTCTGTTACTTTTCCGAGTTTA 180 ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 322 CTTCAGTCGCATACGCCTGATCAGTGTCGCCATTTCTTCTCTGTTACTTTTCCGAGTTTA 381 Query 181 ATTTGTAAGATCTTCGGTTTCGGCGACGCGACCGCGGCATCTCCGGCACCGTCTTCGTCG 240 || |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| Sbjct 382 ATCTGTAAGATCTTCGGTTTCGGCGACACGACCGCGGCATCTCCGGCACAGTCTTCTTCG 441 Query 241 CTGCGGCCGAACGGTTGGATCGATGTAATCTCGGCGGCTAACGATTTGGATTTAGCGGAG 300 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 442 CTGCGACCGAACGGTTGGATCGATGTAATCTCGGCGGCCAACGATTTGGATTTAGCGGAG 501 Query 301 AGAGTATTTAATCTCTTATCACCC-AGTGGAATACTCATGAGCTCAATCTTTGCTGTTGA 359 ||||||| ||||||||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct 502 AGAGTATACAATCTCTTATC-CCCTAGTGGAATACTCATGAGCTCAATCTTCGCTGTTGA 560 Query 360 TAAGTTAGCTCTTGTTAAGTACGTTTTTCCGACCGAACGTTTACCGGAATATGCTCGATT 419 ||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||||| |||| Sbjct 561 TAAATTAGCTCTTGTTAAGTATGTTTTCCCGACGGAACGTTTACCGGAGTATGCTAGATT 620 Query 420 CATGCTCTCCAGCGAGAAGGATCGAAGCGCCTTATCTAATCTGTGTCCCTTTTTGAAAGG 479 |||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| Sbjct 621 CATGCTCTCCAGCGAGAAGGATCGAATTGCGTTATCGAATCTGTGCCCCTTTTTGAAAGG 680 Query 480 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTATGAAGTTAGGCTAAATGTTTTTGA 539 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 681 TAAAATTGAGGAGGATTCAGTTCGTGGTTCATTGTGTGAAGTTAGGCTAAATGTTTTTGA 740 Query 540 GTATTACATGTTTTGGCTCTCTTATTATCCGGTTTGTAGAGGAAACAATGAGAGTTCAGC 599 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 741 GTATTACATGTTTTGGCTCTCTTATTATCCAGTTTGTAGAGGAAACAATGAGATTTCAGC 800 Query 600 --TG----TGAATCCTATCCAAAAGAGAAAGATGTTTAAGCTAGAGAATTGGACACTTAT 653 || |||||||||||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 801 TGTGAATCTGAATCCTATCCAAAAGAGAAACAAGTTTAGGCTAGAGAATTGGACACTTAT 860 Query 654 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCACAAATTGGAGTGTAATCTCTA 713 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 861 CAAAGGTTTTCCAGGGAGTAACAAGCGTGATTCTGATCAGAAATTGGAGTGTAATCTCTA 920 Query 714 CTTAAGGCTTCTTTACTCTTATCTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCACA 773 | |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 921 CATAAGGCTTCTTTACTCTTATTTGAAAGCATTTGTTCCTGTTTTCGACTTAAACGCTCA 980 Query 774 CCAGCCTTATCGTAGCTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 833 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 CCAGCCTTATCGTAGTTCTCTTTTGCATTACGGAAATGGGTATGATGGGTCAGTGATGAC 1040 Query 834 AAGAGCTGAGTTCTTGGTGAATGTGTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 893 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1041 AAGAGCTGAGTTCTTGGTGAATGTTTTCGTGCATTATTGGCTTGTTGAGAATGACTTCTC 1100 Query 894 ACCGTTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 953 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1101 ACCATTTCCTGTTGTTACGGCTAAATCTTTTGGTGTGGCTCCTCCTTTCCGTTCTGCTGT 1160 Query 954 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTTAAGTTGCTTGTCAAGTATCT 1013 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1161 GGAGGAGATTCCACCTACTTGTGGGTTGGAAGAAGTAGTGAAGTTGCTTGTCAAGTATCT 1220 Query 1014 GAATTTGAGCTGGGTTACAAGTGGTGTTGGGAGTGAAAGCTACATTGAGTATGGCGAGAG 1073 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1221 GAATTTGAGTTGGGTTACAAGTGGTGTTGGGAGTGAAAACTACATTGAGTATGGCGAGAG 1280 Query 1074 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATTCCATGTTGCGAATTTGAGCCTTAG 1133 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || Sbjct 1281 TCCACGGTGGAAGACACCGACTTCAGGATCGTCATCCCATGTCGCGAATTTGAGCCTCAG 1340 Query 1134 GCCTCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTACCGCTATATATTGAGGAG 1193 ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1341 GCCGCTCACTTCCTGGAACACCCATTTACAGAGGCCGCTTTATCGTTATATATTGAGGAG 1400 Query 1194 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTCTTCACTATCTG 1253 |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 1401 TTTCTTGTTCTGTCCCATAGGAAGCTCAATTAAGAATGCATCTCAGGTGTTCTCCATCTG 1460 Query 1254 GGTTATGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGATCTTGAAGCTGC 1313 ||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||| Sbjct 1461 GGTTACGTACCTGGAACCATGGATGATCAGTTTGGATGATTTCTCAGTTTTTGAACCTGC 1520 Query 1314 TTTAAATGGATCTGTAAAAGATGTGAAAAAGGAAGAGTCTTATGAATCACGCGTTTGTGG 1373 ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1521 TTTAAGTGGATCTGTAAAAGATATGAAAAAGGAAGATTCTTATGAATCACGCGTTTGTGG 1580 Query 1374 ATACACGTCTTTGTGGCAGAGCTATGTTATATCCAATTATCTCTACTACAGTTCTCTGGT 1433 ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1581 ATACACGCCTTTGTGGCAGAGCTATGTGATATCCAATTATCTCTACTATAGTTCTCTGGT 1640 Query 1434 CATGCATTTTATTGGCTTTGCGCACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1493 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1641 CATGCATTTTATTGGCTTTGCACACAAGTTCCTTCACACAGATCCAGAAATAATAACTCA 1700 Query 1494 GATGGTTCTGAAGGTGATGAGTACATTAACACCGTCAAAAGAGCTTTTGATTCTGATGAA 1553 ||||| ||| |||||||||||||| || ||| ||||||||||||||||| |||||||||| Sbjct 1701 GATGGCTCTTAAGGTGATGAGTACGTTGACATCGTCAAAAGAGCTTTTGGTTCTGATGAA 1760 Query 1554 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1761 GAATATTGATAAAGCCTTTCACTCTAAACAAACTGGACCAGGAAACTCAAAAGTGAACGA 1820 Query 1614 ATTGTCTAGATTTGCTCCATCTATCCGTGAGCAATTGAAGGATTGGGAAGATGGGTTGTG 1673 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1821 ATTGTCTAGATTTTCTCCATCTATCCGTGAGCAGTTGAAGGATTGGGAAGATGGGTTGTG 1880 Query 1674 TGAGAGCAACGCTGATGGTTCATTCTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1733 |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1881 TGAGAGCAACGCTGATGGCTCATACTTGCATGAAAACTGGAACAAAGACTTGAAACTCTT 1940 Query 1734 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGAGCAGAAGC 1793 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1941 TAGTGATGGTGAAGATGGCGGACAACAACTGCTTCAGCTATTCATACTGCGGGCAGAAGC 2000 Query 1794 CGAACTGCAAACTGTATCCGAGAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 1853 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2001 CGAACTGCAAACTGTATCCGATAAAAACCTCACAGAGGCCCTTAAGTGTGTAGATTCACT 2060 Query 1854 AAAGTCAGCGGTTTCAAACTTCTTTGGCGGGCATGTCATAAAACCAATCGCTTTTTCCCT 1913 ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 2061 AAAATCAGCGGTTTCCAACTTCTTTGGCGGGCATGTCGTAAAACCAATCGCTTTTTTCCT 2120 Query 1914 AGAGCCGGACCATCCTCA-AAAAATCCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGCA 1972 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct 2121 AGAGCCGGACCATCCTCAGAAAAA-CCGTGACGAGCTCTTCAAGCCACGTGGTGCTGGTA 2179 Query 1973 ACCAAATAGCAGG-GATTGTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTTTCAGAA 2031 |||||| |||||| | | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 2180 ACCAAACAGCAGGCGGT-GTGAAGTACAAAGGGGACTGGATGACCCGTCCGGTGTCAGAA 2238 Query 2032 GACGAGGTTGCATGGATGGCTAAACTGCTAATCAACATCTCTATCTGGCTCAATGAACGC 2091 ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 2239 GACGAGGTTGCATTGATGGCTAAACTGCTAATCAACATGTCTATTTGGCTCAATGAACGC 2298 Query 2092 CTCGGGCTGAACAAATCTGAGACCAACAAAGAAAAGAAAGAGAATTCAGAGTCAGTGTCA 2151 ||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| ||| Sbjct 2299 CTCGGGCTGAACAAATCTGAGACGAGCAACGACAAGAAAGAGAATTCAGAGTCAGTATCA 2358 Query 2152 TATGTAGACATATCAGGGGAAGATGTGGGAAACGTTGGTGGACCTGGAGATGCTGCGAGG 2211 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 2359 TATGTAGATGTATCAGGGGAAGATGTGGGAAACGTTGCAGGACCTGGAGATGCTGCGAAG 2418 Query 2212 ATGATGTTGCGAGGGTTGGTGATGGTATGTGGTACGGTGTTGCAGCTGATGAGAAGATTC 2271 ||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||||| Sbjct 2419 ATGCTGTTGCGAGGGATGGTGATGGTATGTGGCACAGTGTTGCAGCTGATGAGAAGATTC 2478 Query 2272 GGGGTTCGAGTAAATCTTCGG 2292 ||| ||||||| ||||||||| Sbjct 2479 GGGATTCGAGTCAATCTTCGG 2499 > AT5G47420.1 | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr5:19232836-19235059 FORWARD LENGTH=1247 Length=1247 Score = 1354 bits (733), Expect = 0.0 Identities = 829/876 (95%), Gaps = 4/876 (0%) Strand=Plus/Plus Query 2292 GATCATCTCTGCGGTCTTCACCACTATGGCCGCACCGtttttttCAACTCCATTTCAGCC 2351 |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 153 GATCTTCTCTGTGGTCTTCACCACTATGGCCGCTCCGTTTTTTTCAACTCCATTTCAGCC 212 Query 2352 TTACGTCTACCAGAGTCAACAAGATACTATTACACCTTTCCAGATTTTGGGTGGTGAATC 2411 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 213 TTATGTCTACCAGAGTCAACAAGATACTATTACACCGTTCCAGATTTTGGGTGGTGAATC 272 Query 2412 CCAAGTTGTTCAGATAATGTTAAAGTCGGAGGAGAAAGTCATCGCTAAGCCTGCTTCCAT 2471 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 273 CCAAGTTGTTCAGATAATGTTAAAGTCAGAGGAGAAAGTCATTGCTAAGCCTGCTTCCAT 332 Query 2472 GTGCTATATGTCTGGGTCCATCGAGATGGAAAATACATACACTCCTGAACAAGAAGTTGG 2531 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 GTGCTACATGTCTGGCTCCATCGAGATGGAAAATACATACACTCCTGAACAAGAAGTTGG 392 Query 2532 AGTTTTGCAGTGGATTTTGGGCAAGAGTGTAAGCAGTGTACTTCTTAGGAATACTGGGCA 2591 |||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 393 AGTTCTGCAGTGGATTTTGGGCAAGAGTGTAAGCAGTGTTGTTCTTCGGAATACTGGGCA 452 Query 2592 AAACGATGGATTTGTGGGCATTGCTGCACCTTATTTGGCTAGGATTCTCCCGATCGATTT 2651 |||||| || ||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 453 AAACGACGGGTTTGTTGGTATTGCTGCACCTTATTTGGCTAGGATTCTCCCGATTGATTT 512 Query 2652 GGCAATGTTTGGAGGTGAGATCTTATGCCAGCCAGATGCATTCCTTTGTTCCGTCCATGA 2711 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 513 GGCAATGTTTGGAGGTGAGATCTTATGCCAGCCAGATGCATTCCTTTGTTCTGTCCATGA 572 Query 2712 TGTGAAGATTGTCAACTCTGTTGACCAGAG-GCCAAGAAACATTGTTGCCGCTGGTGCAG 2770 ||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct 573 TGTGAAGGTTGTCAACTCCGTTGACCAGAGAG-CAAGAAACATTGTTGCCGCTGGTGCAG 631 Query 2771 AGGGATTTCTGAGACAACGCCTATCTGGACAAGGTCTTGCTTTCATCCTCGCAGGTGGCT 2830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 AGGGATTTCTGAGACAACGCCTATCTGGACAAGGTCTTGCTTTCATCCTCGCAGGTGGCT 691 Query 2831 CTGTTGTACAAAAAGTTCTGGAGGTAGGAGAAGTTCTCTCCGTTGACGTGTCCTGTATCG 2890 ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| | Sbjct 692 CTGTTGTACAAAAAGTTCTGGAGGTAGGAGAAGTTTTCTCCATTGACGTTTCCTGTATTG 751 Query 2891 CTGCTCTCACACCCTCAATCGATGTCCAAATAAAAAACAATGCTCCTTTGAGACGAGCAG 2950 |||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||| Sbjct 752 CTGCTCTCACACCCTCTATCGATGTCCGAATCAAAAACAATGCTCCTTTTAGACGAGCAC 811 Query 2951 TATTCGGGGGTGATAACGTAGTAATGGCGACTCTAACGGGGCCAGGCATTGTCTTTATCC 3010 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | Sbjct 812 TATTCGGGGGTGATAACGTAGTAATGGCGACTCTAACGGGGCCTGGCATTGTCTTCATTC 871 Query 3011 AGAGCTTACCGTTTCATCGGCTCTCGCAGCGTATTGCAAGGTCGGTGACGTCGCCAAACA 3070 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 872 AAAGCTTACCGTTTCATCGGCTCTCGCAGCGTATTGCAAGGTCGGTAACGTCGCCAAACA 931 Query 3071 TGAGAGAAAATCCAAAACTGTTGATACAGATAG-TGATATTTGCATTCCTCGCATACGCA 3129 ||||||| ||||||||| || |||||||||||| | |||||||| ||||| |||||||| Sbjct 932 TGAGAGAGAATCCAAAATTGCTGATACAGATAGCT-ATATTTGCGTTCCTAGCATACGCT 990 Query 3130 GTGATTCTATCATCGTTGATCTTAACCGAAGTTTGA 3165 |||||| | ||||||||||||||||||||||||||| Sbjct 991 GTGATTTTGTCATCGTTGATCTTAACCGAAGTTTGA 1026 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 157423867134 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5