BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915313
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47300.1 | Symbols: | F-box and associated interaction doma... 1399 0.0
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 159 3e-38
> AT5G47300.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:19198125-19199375 FORWARD LENGTH=1251
Length=1251
Score = 1399 bits (757), Expect = 0.0
Identities = 891/955 (93%), Gaps = 12/955 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAACACATTGGTGATGTCGGACCTTCCAGGAGATTTGTTAGAGGAGATACTTTGT 60
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ATGAGAAACACATTGATGTTGTCGGACCTTCCAGGAGATTTGTTAGAGGAGATACTTTGT 168
Query 61 CGCGTTCCGGCCACATCTCTGAAGCAGTTACGATCTACTTGCAAACAATGGAACAATTTA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGCGTTCCTGCCACATCTCTGAAGCAGTTACGATCTACTTGCAAACAATGGAACAATTTA 228
Query 121 TTCAAAAATGGGAGATTCATAAGAAAACACTTGGATAAAGCCCCAAAGCAGTTTCTGAAT 180
||||| ||||||||||||| |||||||||||||||||||||||||||| | |||| ||||
Sbjct 229 TTCAACAATGGGAGATTCACAAGAAAACACTTGGATAAAGCCCCAAAGGATTTTCAGAAT 288
Query 181 CTCATGTTGAACGAGTCTAGGGT-TTGTTCCATGAGTGTCAGTTTCCATGGAATTCCATC 239
|||||||||| ||| |||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 289 CTCATGTTGAGCGACTCTAGGGTATT-TTCGATGAGTGTCAGTTTCCATGGAATTCCATC 347
Query 240 TGTAGAGGCCACAGGTGAACTTAAGC-TAATCGACTCCGTTTCTAGTTTAGAAGATCAAT 298
||||||||||||| ||||||||| || |||||||||| |||||||||| |||||| |||
Sbjct 348 TGTAGAGGCCACATGTGAACTTA-GCCTAATCGACTCTTTTTCTAGTTTTGAAGATAAAT 406
Query 299 TCGAGATTTCTCAAGTCTCTCATTGTGACGGCTTATTGTTATGCACCGACG-A--CA-C- 353
|||||||||||||||||| ||| |||||||||||||||||||||||||||| | || |
Sbjct 407 TCGAGATTTCTCAAGTCTTTCACTGTGACGGCTTATTGTTATGCACCGACGCAGACAACA 466
Query 354 -TAGAATCGTGGTTTGGAACCCGTGTACTGGTCAAACTAGGTGGATCGAACCCAATAATC 412
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 467 CTAGAATCGTGGTTTGGAACCCGTGTACTGGTAAAACTAGGTGGATTGAACCCAATAATC 526
Query 413 GTTGCTACTACTATGCTTTGGGATCCTACCAAGACAAATCCTACAGTAATAGCTACAAAA 472
||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||
Sbjct 527 GTTGCTACTACTATGCTTTTGGATCCTACTTGGACAAATCCTACGGTAATAGCTACAAAA 586
Query 473 TATTGGGCTATAGTGGTTATGGCTTCAAGAACCAAGAACTCGCAATCTATGAAATTAACT 532
||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 587 TATTGAGCTATAGTGGTTATGGCTACGAGAACCAAGAACTCGCAATCTATGAGATTAACT 646
Query 533 CTCATTCATGGAGGTTTCTTGATGTCACTTGTGACTGCATCCTCCAAAGATATACTGATT 592
|||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 647 CTCAATCATGGAGGTTTCTTGATGTCACTCGTGACTGCATCCTCGAAAGATATACTGATT 706
Query 593 ACGGCGTGTCTTTAAAGGGAAATACTTACTGGTTTGCGTCAGATGAGAAAGAGAAAAATC 652
|||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 707 ACGGTGTGTCTTTGAAGGGACATACTTACTGGTTTGCGTCAGATGAGAAAGAGAAAAATC 766
Query 653 ACAACGTATTTCTGGTCAGTTTTGATTATACAACTGAAAGATTTAGACGTCTACGTCTTC 712
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 767 TCAGCGTATTTCTAGTCAGTTTTGATTATACAACTGAAAGATTTAGACGTCTACGTCTCC 826
Query 713 CGTATCAGTGCCCTGATTATAAAACTGCGTCTCTATCCGTTGTTAGAGAAGATAAGCTTT 772
|||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||
Sbjct 827 CGTATCAGTGCCCTGATTATAACACTGCGTCTTTATCCGTTGTTAGAGAAGAGAAACTTG 886
Query 773 CGGTCTTGTTACAGCGCGATAATACATCAAGGACAGAGATATGGGTGACAAGTAAGATTG 832
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 887 CGGTGTTGTTACAACGCGAAAATACATCAAGGACAGAGATATGGGTGACAAGTAGGATTG 946
Query 833 GTGAGACCAAAGTGGTGTCTTGGAGCATGGTCTTAGCAGTGGATTTCCCGTCCGAACTAT 892
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GTGAGACCAAAGTGGTGTCGTGGAGCATGGTCTTAGCAGTGGATTTCCCGTCCGAACTAT 1006
Query 893 TTATTT-GTTCTGGCATAAGTTTCTTGGTCGATGCCGAGAAAAAAGTCGTCGTAT 946
| |||| || ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1007 TCATTTTGT-CTGGCATAAGTTTCTTGGTCGATGCGGAGAAAAAATTCGTCGTAT 1060
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 159 bits (86), Expect = 3e-38
Identities = 293/389 (75%), Gaps = 30/389 (8%)
Strand=Plus/Plus
Query 37 GATTTGTTAGAGGAGATACTTTGTCGCGTTCCGGCCACATCTCTGAAGCAG-TTACGATC 95
|||||| |||| || ||||| | | ||| |||||||||||||||| | | ||||||||
Sbjct 19 GATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAAC-GATTACGATC 77
Query 96 TACTTGCAAACAATGGAACAATTTATTCAAAAATGGGAGATTCATA-AGAAAACACTTGG 154
|||||||||||||||||||| |||||||||||| | || |||| ||||| |||||
Sbjct 78 TACTTGCAAACAATGGAACACTTTATTCAAAAAACGAAGTTTCAGCCAGAAA-CACTTTC 136
Query 155 ATAAAGCCCCAAAGCAGTTTCTGAATCTCATGTTGAACGAGT-CTAGGGTTTGTTCCATG 213
||| ||| |||||| ||| | || |||||||||||| |||| | || ||||| || |||
Sbjct 137 ATATAGCTCCAAAGGAGTCTATGGTTCTCATGTTGAAGGAGTAC-AGAGTTTGCTCAATG 195
Query 214 AGTGTCAGTTTCCATGGAA-T--TCCATCTGTAGAGGC-CACAGGTGA-ACTTAAGC-TA 267
| | ||| | || ||| | ||||||||||||| || |||| | |||| || ||
Sbjct 196 AATATCAATCTCAATGTTTCTCCTCCATCTGTAGAGTTTCA-AGGT-ACACTTG-GCATA 252
Query 268 ATCGAC--T-CCGTTTCTAGTTTAGAAGATCAATTCGAGATT-TCTCAAGTCTCTCATTG 323
| || | || ||||| ||||| || ||| ||||||| || |||| | ||| ||
Sbjct 253 AAAGATGATTCCCATTCTAATTTAG--GA-CAAGTCGAGATAGTCG-AAGTTTATCACTG 308
Query 324 TGACGGCTTATTGTTATGCACCGAC--G--ACACTAGAATCGTGGTTTGGAACCCGTGTA 379
||| || || ||||||||| || || | ||| |||| ||||||||||||| ||||||
Sbjct 309 TGATGGTTTGTTGTTATGCGCC-ACCAGGGACAATAGACTCGTGGTTTGGAATCCGTGTT 367
Query 380 CTGGTC-AAACTAGGTGGATCGAACCCAA 407
||| |||| ||||||||| ||| |||
Sbjct 368 -TGGGGGAAACCAGGTGGATCCAACTCAA 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5