BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915317

Length=585
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19140.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   366    1e-100


> AT4G19140.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469664-10471390 
FORWARD LENGTH=1193
Length=1193

 Score =  366 bits (198),  Expect = 1e-100
 Identities = 237/256 (93%), Gaps = 1/256 (0%)
 Strand=Plus/Plus

Query  294   GTCATGGCTTAATGGAAAAGCAACACCAAAGTACTGGAAAGATGATGTGATTGCTGGCAT  353
             |||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||
Sbjct  799   GTCATGGCTTAATGGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCAT  858

Query  354   TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGT  413
             |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| 
Sbjct  859   TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGC  918

Query  414   AAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCT  473
             ||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
Sbjct  919   AAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATAT  978

Query  474   CTTGGTACAAGTGAAGCGGTGCATGTTTGCTTCTTGTTTATTTCTCGGTTCTCGGATGAA  533
              |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
Sbjct  979   ATTGGTACAAGTGAAACG-TGCATGTTTGCTTCTTGTTTACTTCTCGGTTCTCGGATGGA  1037

Query  534   TGGCGATACAATACTT  549
             |||| | |||||||||
Sbjct  1038  TGGCTACACAATACTT  1053



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28131122320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5