BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915326 Length=567 Score E Sequences producing significant alignments: (Bits) Value AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-... 178 5e-44 AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membra... 65.8 4e-10 > AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-10159748 FORWARD LENGTH=1673 Length=1673 Score = 178 bits (96), Expect = 5e-44 Identities = 102/105 (97%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 71 GGATTAAGGAATGGAATCTTTTGGAGACGACGGAGCAACGACCTAAGGCTTTGACGTCGC 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 251 GGATTAAGGAATGGAATCTTTTGGAGACGACGGAGCAACGACCTAAGGCTTTGACGTCGC 192 Query 131 CGATGTTGTTGACGATGAGGAGGAGGATTGAGTCAGGGAGCTTAT 175 |||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 191 CGATGTTGTTGAAGATGAGGAGGAGGATTGAGTCTGGGAGGTTAT 147 Score = 108 bits (58), Expect = 7e-23 Identities = 69/74 (93%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 1 ATGGCGGAGAAAGGAGTAGCAGCGGCGACGGATCGAGGTTTATCGGAGAGGAGAGAGGAA 60 |||||||||||||||| ||| |||| | |||||||||||||||||||||||||||||||| Sbjct 366 ATGGCGGAGAAAGGAGAAGCGGCGGAGGCGGATCGAGGTTTATCGGAGAGGAGAGAGGAA 307 Query 61 GAATCGTCGT-GGA 73 |||||||||| ||| Sbjct 306 GAATCGTCGTCGGA 293 > AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161142-19163432 REVERSE LENGTH=1072 Length=1072 Score = 65.8 bits (35), Expect = 4e-10 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 529 CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT 563 ||||||||||||||||||||||||||||||||||| Sbjct 595 CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT 629 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27226907674 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5