BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915326

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18380.1 | Symbols:  | F-box family protein | chr4:10157887-...   178    5e-44
  AT5G47180.1 | Symbols:  | Plant VAMP (vesicle-associated membra...  65.8    4e-10


> AT4G18380.1 | Symbols:  | F-box family protein | chr4:10157887-10159748 
FORWARD LENGTH=1673
Length=1673

 Score =  178 bits (96),  Expect = 5e-44
 Identities = 102/105 (97%), Gaps = 0/105 (0%)
 Strand=Plus/Minus

Query  71   GGATTAAGGAATGGAATCTTTTGGAGACGACGGAGCAACGACCTAAGGCTTTGACGTCGC  130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  251  GGATTAAGGAATGGAATCTTTTGGAGACGACGGAGCAACGACCTAAGGCTTTGACGTCGC  192

Query  131  CGATGTTGTTGACGATGAGGAGGAGGATTGAGTCAGGGAGCTTAT  175
            |||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct  191  CGATGTTGTTGAAGATGAGGAGGAGGATTGAGTCTGGGAGGTTAT  147


 Score =  108 bits (58),  Expect = 7e-23
 Identities = 69/74 (93%), Gaps = 1/74 (1%)
 Strand=Plus/Minus

Query  1    ATGGCGGAGAAAGGAGTAGCAGCGGCGACGGATCGAGGTTTATCGGAGAGGAGAGAGGAA  60
            |||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||
Sbjct  366  ATGGCGGAGAAAGGAGAAGCGGCGGAGGCGGATCGAGGTTTATCGGAGAGGAGAGAGGAA  307

Query  61   GAATCGTCGT-GGA  73
            |||||||||| |||
Sbjct  306  GAATCGTCGTCGGA  293


> AT5G47180.1 | Symbols:  | Plant VAMP (vesicle-associated membrane 
protein) family protein | chr5:19161142-19163432 REVERSE 
LENGTH=1072
Length=1072

 Score = 65.8 bits (35),  Expect = 4e-10
 Identities = 35/35 (100%), Gaps = 0/35 (0%)
 Strand=Plus/Plus

Query  529  CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT  563
            |||||||||||||||||||||||||||||||||||
Sbjct  595  CAAATGGTGATGGACAAAGCTCGGAAACCATCTCT  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5