BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915337

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   592    1e-168


> AT5G47090.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); 
Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:19127259-19128769 FORWARD 
LENGTH=1224
Length=1224

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 457/517 (88%), Gaps = 33/517 (6%)
 Strand=Plus/Plus

Query  1    AGAGAGCCTTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGATGGGTAGGAAT  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  433  AGAGAGCCGTATCTACATCATGAGTATGTTGGGAAGTTTCAGGATGTGATGGGAAGGAAC  492

Query  61   ATGGCTAGGCCTGGAGAACGTTGGTCTGAGACGTTGATGAGAAGGGCAGAGGAAGCGGTT  120
            |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| 
Sbjct  493  ATGGCTAGGCCTGGAGAACGTTGGTCTGAGACTTTGATGAGACGGGCTGAGGAAGCGGTG  552

Query  121  TTGGTTACTCGGATTAGAGAGGAGCAGCAGAGGTTAGGTGTTGCAGAGAGTGATTGGATT  180
            ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  553  TTGGTTACTCGTATTAGAGAGGAGCAGCAGAGGTTAGGTGTTTCAGAGAGTGATTGGGTT  612

Query  181  GGTAATgagaagatggaggaatcagaagaagaagaagaagaggaagaggaggaagaagag  240
            |||||||||||||||||||||||||||||||| ||||| ||||||    || |||| |||
Sbjct  613  GGTAATGAGAAGATGGAGGAATCAGAAGAAGAGGAAGAGGAGGAATC--AG-AAGAGGAG  669

Query  241  gaatcggaagaagatgaagaagcgaagaatcctacagaagCTAGCTCAAGCCTTGAACAG  300
            |||   |||||||||||||||||||||||||||||||||||||||||     ||   || 
Sbjct  670  GAAGAAGAAGAAGATGAAGAAGCGAAGAATCCTACAGAAGCTAGCTC-----TT---CA-  720

Query  301  GTTACGGATATCAATGGAACATTGCATGATAGAGAACATAACA-ACAAGGCAACAACCGT  359
               | |  |  |  || ||  | |  | | | |||||| || | | ||||||||||| ||
Sbjct  721  ---A-G--T--C--TG-AA--TGG--T-A-A-AGAACAGAA-AGAGAAGGCAACAACAGT  761

Query  360  CTTACCGCCGGAGGAGATGCAAGATATGATGGAGCAGTTCACATCAATCATGCAACAGAA  419
            ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct  762  CTTACCGCCAGAGGAGATGCAAGATATGATGGATCAGTTCACATCAATCATGGAACAGAA  821

Query  420  GTTCTTATCGGGAGAAGATCATCAACATTTGGATTACACAAAGATAGACAATGACGAGAC  479
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  822  GTTCTTATCGGGAGAAGATCATCAACATTTGGATTACGCAAAGATAGACAATGACGAGAC  881

Query  480  TCTTGATGATCATTGGCTTCGAAGAGATTGGCCTTGA  516
            |||||||||||||||||||||| |||||||||| |||
Sbjct  882  TCTTGATGATCATTGGCTTCGA-GAGATTGGCCGTGA  917



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5