BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915339

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47800.1 | Symbols:  | Phototropic-responsive NPH3 family pr...   207    4e-53


> AT5G47800.1 | Symbols:  | Phototropic-responsive NPH3 family 
protein | chr5:19353676-19356300 FORWARD LENGTH=2118
Length=2118

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 237/294 (81%), Gaps = 22/294 (7%)
 Strand=Plus/Plus

Query  33    AACGGTCGTCCAAGCCCTCTTCTTCGACCAAGAGAGCAGTTCCAAGGGAGCATCAAGTCG  92
             ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1656  AACGGTCGTCCAAGCACTCTTCTTCGACCAAGAGAGCGGTTCCAAGGGAGCATCAAGTCG  1715

Query  93    ATTAGAGAGCCAAGAATTCGTCTCAAGAGTTAAAGAGACTCCCACGGAT-ATACACAGCA  151
             || ||||||||||||| || || |||||| ||||||||| ||||| ||| | ||| ||| 
Sbjct  1716  ATCAGAGAGCCAAGAACTCTTCACAAGAGGTAAAGAGACACCCACTGATGA-ACATAGC-  1773

Query  152   AT-ATGCACAAGCTTCACCTAGGTCCAGCTGAAACA--G-CTTCTATAGGGAA--AGC--  203
             || |||||||||||||||||||||||||||   |||  |    ||| |  |||   ||  
Sbjct  1774  ATGATGCACAAGCTTCACCTAGGTCCAGCTTCTACAGGGAAAGCTA-A--GAACGTGCTT  1830

Query  204   GAAGA-ATATACTTGAG-GGAGGAG-GCAAA--AGA-GGAG-A-AGACCCCAAGAAGATC  255
             |||||   || |   || |||| || | |||  |||   || | ||| || |||||||| 
Sbjct  1831  GAAGAGGGATGCAAAAGAGGAGAAGAGAAAACCAGATCCAGTACAGATCCTAAGAAGATA  1890

Query  256   GTGCGGGAACGAAGAGGGTCAGAGCATAAGCATCATATAAGTAGAGACAGGTAG  309
             ||| || || ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct  1891  GTGTGGAAAGGAACAGGGTCAGAACATAAGCATCATATAAGTAGAGACAGGTAG  1944



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5