BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915355
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47077.1 | Symbols: LCR6 | low-molecular-weight cysteine-ric... 274 2e-73
> AT5G47077.1 | Symbols: LCR6 | low-molecular-weight cysteine-rich
6 | chr5:19123506-19123779 REVERSE LENGTH=228
Length=228
Score = 274 bits (148), Expect = 2e-73
Identities = 193/214 (90%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 13 tttttttttGTTTACATCATTCTTATTCTAGGATCGATGGTGAATGAGATTCAAGGACAA 72
||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 16 TTTCTTTTTGTCTACATCATCCTTATTCTAGGATCGATGGTGAATGAGATTCAAGGACAA 75
Query 73 -AC-CA-TGTGTCATGAGATTTTACCAGAAACAGATTGTGGTGTTGGCTCGTGTACCGCT 129
| || ||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||
Sbjct 76 CATGCAATGTGTCATGAGATTTTACCGGAAACTGATTGTGGTGCTGGTTCGTGTACCGCT 135
Query 130 TTGTGCTTACAATTATGGAGAGGAACCGGCAAGTGTGTTAGAACAAATGATC-GACGCTT 188
|| |||||||| |||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 136 TTATGCTTACAGTTATGGAGAGGAACCGGCAAATGTGTTAGAACAAATGATCAGAAA-TT 194
Query 189 AATATGCCTCTGCAATTTTGAATGCATAGTTTGA 222
|||||| |||||||||||||| ||||| ||||||
Sbjct 195 AATATGTCTCTGCAATTTTGAGTGCATTGTTTGA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9953014302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5