BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915365

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G46990.1 | Symbols:  | Plant invertase/pectin methylesterase...   693    0.0  


> AT5G46990.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:19067692-19068255 REVERSE 
LENGTH=564
Length=564

 Score =  693 bits (375),  Expect = 0.0
 Identities = 431/457 (94%), Gaps = 7/457 (2%)
 Strand=Plus/Plus

Query  10   AGAAAGCTTCAAAAAAT-TCAGAACCCACATTACTACAAGTTCTGCATTGCATCTATTAG  68
            |||||||||| |||||| || ||| |||||||||||||||||||||||||||||||| ||
Sbjct  95   AGAAAGCTTC-AAAAATGTCGGAA-CCACATTACTACAAGTTCTGCATTGCATCTATCAG  152

Query  69   CGAAAACCCGGAGAGTCAACAAGTAA-AAACTATCGATGAATTGATCGGGGTAGGAGTGA  127
            ||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||
Sbjct  153  CGAAAACCCGGAGAGTCAAAAAGTAAGAAA-TATCGATGAATTGATCGGAGTAGGAGTGA  211

Query  128  AAAACGCTATTTCTAACATGACGAATGTGAAAGGAATTGTGGAGAGGATTCTGAAGGAAA  187
            ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  212  AAAACGCTATTTCGAACATGACGAACGTGAAAGGAATTGTGGAGAGGATTCTGAAGGACA  271

Query  188  GAAAGTATACGAGTAAACTAAGTGAGAAGATGTTGCGCGTTTGTGTTAAGCTTTATTCTG  247
            ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct  272  GAAAGTATACGAGTAAAATGAGTGAGAAGATGTTGCGCGTTTGCGTTAAGCTTTATTCTG  331

Query  248  AGGGCACTAACTTGTTAATCAAATGTTTAGGGTACATTAAATTGCGGGATTTTGATAAAC  307
            |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| 
Sbjct  332  AGGGCACTAACTTGTTAACCAAATGTTTAGAGTACATTAAATTGCGGGATTTCGATAAAG  391

Query  308  TCCACAATACTATTCGTCATGCAAGAGTTGTTCCAAGAGAGTGTGAAATGGGATTCAATG  367
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  392  TCCACAATACTATTCGTCATGCAAGAGTTGTTCCGAGAGAGTGTGAAATGGGATTCAATG  451

Query  368  ACGATAATAAACAGAAATCTCCGGTGACAAAAGAGAACGATGTTCTCTTCGACACCGTCG  427
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  452  ACGATAATAAACAGAAATCTCCGGTGACGAAAGAGAACGATGTTCTATTCGACACCGTCG  511

Query  428  AAATTGCTCAAG-CTTTTAATTACTATGCTCATGTAA  463
            | |||||||| | |||||||||||||||||||| |||
Sbjct  512  ACATTGCTCA-GTCTTTTAATTACTATGCTCATATAA  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5