BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915376 Length=240 Score E Sequences producing significant alignments: (Bits) Value AT5G46871.1 | Symbols: | Putative membrane lipoprotein | chr5:... 340 3e-93 AT5G46874.1 | Symbols: | Putative membrane lipoprotein | chr5:... 333 4e-91 > AT5G46871.1 | Symbols: | Putative membrane lipoprotein | chr5:19018101-19018443 FORWARD LENGTH=237 Length=237 Score = 340 bits (184), Expect = 3e-93 Identities = 224/242 (93%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 1 ATGAAGACCTCAGCTTTCTTCATTGTTGTATTGCTCATTCTATCATGTTCATCGTCAATG 60 ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGAAGACCTCAGCTTTCTTCATCGCTGTATTGCTCATTCTATCATGCTCATCATCAATG 60 Query 61 ATAATGGGAGTTCA-CTATCATGAGAACCGTTGCCATGACTGGAAAGATTGTGCTATATG 119 |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 ATAATGGGAGTT-AGCTATCATGAGAACCGTTGCCATGACTGGGTAGATTGTGCTATATG 119 Query 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCATGTTTGCGATTGTAAGCCAAA 179 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCGTGTTTGCGATTGTAAGCCAAA 179 Query 180 ATCTCTTCCGACTAACGACGAGATTCCTCAA-TCGACTTCTTCTTCCAATTCGAATAACT 238 |||||||||||| |||||||||||||| ||| ||| ||||||| | | |||||| |||| Sbjct 180 ATCTCTTCCGACCAACGACGAGATTCC-CAAATCGGCTTCTTC--C-AGTTCGAAGAACT 235 Query 239 AA 240 || Sbjct 236 AA 237 > AT5G46874.1 | Symbols: | Putative membrane lipoprotein | chr5:19022383-19022699 FORWARD LENGTH=240 Length=240 Score = 333 bits (180), Expect = 4e-91 Identities = 222/242 (92%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1 ATGAAGACCTCAGCTTTCTTCATTGTT-GTATTGCTCATTCTATCATGTTCATCGTCAAT 59 ||||||| || ||||||||||||| || || ||||| ||| | ||||||||||| ||||| Sbjct 1 ATGAAGATCTTAGCTTTCTTCATT-TTCGTGTTGCTAATTTTTTCATGTTCATCATCAAT 59 Query 60 GATAATGGGAGTTCACTATCATGAGAACCGTTGCCATGACTGGAAAGATTGTGCTATATG 119 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 60 GATAATGGGAGTTCACTATCATGAGTACCGTTGCCATGACTGGGTAGATTGTGCTATATG 119 Query 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCATGTTTGCGATTGTAAGCCAAA 179 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCGTGTTTGCGATTGTAAGCCAAA 179 Query 180 ATCTCTTCCGACTAACGACGAGATTCCTCAATC-GACTTCTTCTTCCAATTCGAATAACT 238 |||||||||||| ||||| ||| |||||||||| | ||| |||||||||||||||| ||| Sbjct 180 ATCTCTTCCGACCAACGAGGAGGTTCCTCAATCAG-CTTATTCTTCCAATTCGAATTACT 238 Query 239 AA 240 || Sbjct 239 AA 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10857833784 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5