BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915376
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46871.1 | Symbols: | Putative membrane lipoprotein | chr5:... 340 3e-93
AT5G46874.1 | Symbols: | Putative membrane lipoprotein | chr5:... 333 4e-91
> AT5G46871.1 | Symbols: | Putative membrane lipoprotein | chr5:19018101-19018443
FORWARD LENGTH=237
Length=237
Score = 340 bits (184), Expect = 3e-93
Identities = 224/242 (93%), Gaps = 7/242 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACCTCAGCTTTCTTCATTGTTGTATTGCTCATTCTATCATGTTCATCGTCAATG 60
||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAAGACCTCAGCTTTCTTCATCGCTGTATTGCTCATTCTATCATGCTCATCATCAATG 60
Query 61 ATAATGGGAGTTCA-CTATCATGAGAACCGTTGCCATGACTGGAAAGATTGTGCTATATG 119
|||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATAATGGGAGTT-AGCTATCATGAGAACCGTTGCCATGACTGGGTAGATTGTGCTATATG 119
Query 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCATGTTTGCGATTGTAAGCCAAA 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCGTGTTTGCGATTGTAAGCCAAA 179
Query 180 ATCTCTTCCGACTAACGACGAGATTCCTCAA-TCGACTTCTTCTTCCAATTCGAATAACT 238
|||||||||||| |||||||||||||| ||| ||| ||||||| | | |||||| ||||
Sbjct 180 ATCTCTTCCGACCAACGACGAGATTCC-CAAATCGGCTTCTTC--C-AGTTCGAAGAACT 235
Query 239 AA 240
||
Sbjct 236 AA 237
> AT5G46874.1 | Symbols: | Putative membrane lipoprotein | chr5:19022383-19022699
FORWARD LENGTH=240
Length=240
Score = 333 bits (180), Expect = 4e-91
Identities = 222/242 (92%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 1 ATGAAGACCTCAGCTTTCTTCATTGTT-GTATTGCTCATTCTATCATGTTCATCGTCAAT 59
||||||| || ||||||||||||| || || ||||| ||| | ||||||||||| |||||
Sbjct 1 ATGAAGATCTTAGCTTTCTTCATT-TTCGTGTTGCTAATTTTTTCATGTTCATCATCAAT 59
Query 60 GATAATGGGAGTTCACTATCATGAGAACCGTTGCCATGACTGGAAAGATTGTGCTATATG 119
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 60 GATAATGGGAGTTCACTATCATGAGTACCGTTGCCATGACTGGGTAGATTGTGCTATATG 119
Query 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCATGTTTGCGATTGTAAGCCAAA 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 GTGCAAACAATGGGTTCCTCAACCAAAATGTATTAACCGTGTTTGCGATTGTAAGCCAAA 179
Query 180 ATCTCTTCCGACTAACGACGAGATTCCTCAATC-GACTTCTTCTTCCAATTCGAATAACT 238
|||||||||||| ||||| ||| |||||||||| | ||| |||||||||||||||| |||
Sbjct 180 ATCTCTTCCGACCAACGAGGAGGTTCCTCAATCAG-CTTATTCTTCCAATTCGAATTACT 238
Query 239 AA 240
||
Sbjct 239 AA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5