BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915377
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46870.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1323 0.0
> AT5G46870.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19015233-19017063 FORWARD LENGTH=1214
Length=1214
Score = 1323 bits (716), Expect = 0.0
Identities = 804/847 (95%), Gaps = 4/847 (0%)
Strand=Plus/Plus
Query 1 ATGTCGATGGTAACTGTCAAAGTTAGCAACGTTTCTCTTGAATCAACAGAAAGAGATCTC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 254 ATGTCGATGGTAACTGTCAAAGTTAGCAACGTTTCTCTTGAAGCAACAGAAAGAGATCTC 313
Query 61 AAGGAATTCTTCTCTTTTTCCGGCGATATTGCTTACCTAGAAACACAAAGCGAGAATGAA 120
||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 314 AAGGAGTTCTTCTCTTTTTCCGGCGATATTGCTTACCTCGAGACTCAAAGCGAGAATGAT 373
Query 121 GGTTCTAAATTAGCATATGTTACATTCAAGGATTTACAAGGAGCTGAAACCGCAGTTCTT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGTTCTAAATTAGCATATGTCACATTCAAGGATTTACAAGGAGCTGAAACCGCAGTTCTC 433
Query 181 CTCACCGGATCGACGATTGTTGATTCATCGGTTACGGTTACAATGTCACCAGATTATCAA 240
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 434 CTCACCGGATCGACGATTGTTGATTCATCGGTCACAGTTACAATGTCACCAGATTACCAA 493
Query 241 CTACCTCCTGAGGCTTTAGCTTCCATTGAATCATTGAAAGAGAGCAATAAATCATCATCA 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CTACCTCCTGATGCTTTAGCTTCCATTGAATCATTGAAAGAGAGCAATAAATCATCATCT 553
Query 301 CCTTCTCGCGAAGATGTATCGGTATTTAGAAACGCTGAAGATGTTGTAAGTGGTATGATT 360
||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 554 CCTACGCGAGAAGATGTATCGGTATTTAGAAAAGCTGAAGATGTTGTAAGTGGTATGATT 613
Query 361 TCAAAAGGGTTTATTCTAGGAAAAGACGCGATAGCTAAAGCGAAGAGCCTTGATGAGAAG 420
|||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 614 TCAAAAGGGTTTGTTTTAGGTAAAGACGCTATAGCTAAAGCGAAGAGTCTTGATGAGAAG 673
Query 421 CATCAGTTGACATCAACAGCTTCAGCTAGAGTCACATCTTTCGACAAAAGAATCGGATTC 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 674 CATCAGTTGACATCAACAGCTTCAGCTAGAGTTACATCTTTCGACAAAAGAATCGGATTC 733
Query 481 ACAGAGAAAATCAACACCGGGACAACGGTTGTGAGCGAAAAAGTTAAAGAAGTTGATCAG 540
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 734 ACGGAGAAAATCAACACCGGGACTACAGTTGTGAGCGAAAAAGTTAAAGAAGTTGATCAG 793
Query 541 AAGTTTCAAGTCACAGAGAAAACTAAATCAGCAATAGCTGCAGCTGAGCAAACAGTGA-C 599
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
Sbjct 794 AAGTTTCAAGTCACAGAGAAAACAAAATCAGCAATAGCTGCTGCTGAGCAGACAGTGAGC 853
Query 600 TAATGCTGGTTCTGCTATAATGAAAAACCGGTATGTTTTAACCGGTGCCACATGGGTTAC 659
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 854 -AATGCTGGTTCTGCTATAATGAAAAACCGGTATGTTTTAACCGGTGCCACGTGGGTTAC 912
Query 660 GGGTGCGTTTAACAAAGTGACTAAAGCTGCTgaagaagttggacaaaaggcaaaagagaa 719
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 913 GGGTGCGTTTAACAGAGTGAGTAAAGCTGCTGAAGAAGTTGGACAAAAGGCGAAAGAGAA 972
Query 720 agttggtatggttgaggaagaagaagaagagaagaagaaagTGGTTGATGAAGTTGCTAG 779
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AGTTGGTTTGGCTGAGGAAGAAGAAGAAGAGAAGAAGAAAGTGGTTGATGAAGTTGCTAT 1032
Query 780 CA-TCCATCTGACTGAAACACCAAAGGCTTTAGACCAATCAGAACAAGATTCAAAACTCT 838
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 -AGTTCATCTGACTGAATCACCAAAGGCTTTAGACCAATCAGAACAAGATTCAAAACTCC 1091
Query 839 CTGAATC 845
|||||||
Sbjct 1092 CTGAATC 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5