BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915379
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46850.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1177 0.0
> AT5G46850.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: GPI anchor biosynthetic process; LOCATED
IN: endoplasmic reticulum membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). | chr5:19010608-19012038
FORWARD LENGTH=1112
Length=1112
Score = 1177 bits (637), Expect = 0.0
Identities = 766/829 (92%), Gaps = 6/829 (1%)
Strand=Plus/Plus
Query 36 GGTTGGAACAAATTATAGAGATTCTGATGAATTCTTCAATTCCGATTCAATCTGTATCTC 95
||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||
Sbjct 262 GGTTGGAACAAATTATAGAGATTCTCATGAATTTTTCGATTCCGATACAATCTGTATCTC 321
Query 96 TGATCAATACATTATGGAGTCTTATTTCACTAGACACACTTCCTTAGACGATTCAGAGTT 155
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 322 TGATCAATACATTATGGAGTCTTATTTCACTACATACACTTCCTTAGACGACTCAGAGTT 381
Query 156 TCGAAACTTCTTGCTTCTTCAACAATGTTCTAACAAAGTTCATACTCAAGATTCAAATAT 215
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 382 TCGAAACTTCTTGCTTCTTCAACAATGTTCTGACAAAGTTCCTACTCAAGATTCAAACAT 441
Query 216 TGTTCCTTCAACTTCATTGATACAACACAGAAACATTACAGGTGAAGGTTCTCATCGTAA 275
||||||| |||||||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 442 TGTTCCTGCAACTTCATTTATACAACATAGAAACATTACTGGTGAAGGTTCACATCGTAA 501
Query 276 TCTCCTCACATCCATCAAGTTTCAGCTTCTTCATCTTCACTCTGAGTCTGAGTTTCGCGA 335
|||| |||||||||||||| || |||||||| |||||| |||||| ||||||| ||
Sbjct 502 TCTCATCACATCCATCAAGCTT---CTTCTTCA---TCACTCAGAGTCTCAGTTTCGTGA 555
Query 336 GCTCGTGATCGTTGAACGGTTGCCTTTGGGTGTTTTTGCTGATCCTTTTGAGCTTCAGAG 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GCTCGTGATCGTTGAACGGTTGCCTTTGGGTGTTTTTGCTGATCCTTTTGAGCTTCAGAG 615
Query 396 TCTTCAGCAACGTAAAGTTTTCAGTGACGTATCTGTGTTTGGAGACACGAATCTTGAGCT 455
|||||| ||||| | || |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 616 TCTTCAACAACGCAGAGCTTTCAGTGACGTATCTGTGTTTGGTGACACAAATCTTGAGCT 675
Query 456 ACCTTCGTTTAGATCAAACAGGTCTGTCGTTGAGATTCATGTCGAAATCAGTTCTAGGGA 515
|||||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |
Sbjct 676 GCCTTCGTTTAGATCGAACAGATCCGTCGTTGAGATTCATGTTGAAATCAGCTCTAGAAA 735
Query 516 TTGTGAAAATGGTGGAATCAGCTTAAAGCTTCCTTTACATGCTCGTTATCAGCCTCTGGA 575
|| ||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 736 TTATGAAAATGGTGAAATAAGCTTTAAGCTTCCTTTACATGCTCGGTATCAGCCTCTGGA 795
Query 576 CGACAGTGGATACTCTAGAGTGGAGTTTGGAGAGCCGGACTTGTTCTTGTGCTCGAGCCA 635
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 796 CGACAGTGGATACTCTAGAGTGGAGTTTGGCGAGCCAGACTTGTTCTTGTGCTCGAGCCA 855
Query 636 TGTACAAAACCAGCGACATGAACAGAGAAGATGTTTGGTTTTGTTGATTGGCAGATCGAA 695
||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 856 TGTACAAAACCAGCGACGTGAACGGAGGAGATGTTTGGTTTTGTCGATTGGCAGATCGAA 915
Query 696 GACTGAAACCAGGTCTGTTTTCTGGGATATCCCAGCCGGAATCAGGGGTCATACAGAGTA 755
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 916 GACTGAAACCAGGTCTGTTTTCTGGGATATCCCTGCCGGAATCAGGGGTCATACAGAGTA 975
Query 756 TGTTTCCTCCTTGACATTTGCAGCTGCGGTTTTGTCTGCGTTTTCAATTCTTGTGGCATC 815
||||||| |||||||||| || ||||||||||| ||||| |||||||| || ||||||||
Sbjct 976 TGTTTCCGCCTTGACATTCGCCGCTGCGGTTTTTTCTGCATTTTCAATACTCGTGGCATC 1035
Query 816 GGTTTTGAGCTCCAAGGTTGAATCTTGTAAAAACTCAAAGCAGTCATGA 864
|||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1036 GGTTTTGAGCTCAAAGGGTGAATCTTGTAAAAACTTGAAGCAGTCATGA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5