BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915381
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 | c... 1779 0.0
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 ... 154 2e-36
> AT5G46830.1 | Symbols: ATNIG1, NIG1 | NACL-inducible gene 1 |
chr5:19002719-19004254 FORWARD LENGTH=1536
Length=1536
Score = 1779 bits (963), Expect = 0.0
Identities = 1373/1560 (88%), Gaps = 72/1560 (5%)
Strand=Plus/Plus
Query 1 ATGATTAATTCCGACGATAACTTATCAATGCTCGAAGCTCTCTTCACCTCCGATCTGTCG 60
||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||| ||||
Sbjct 1 ATGATTAATACCGACGATAACTTATTGATGATCGAAGCTCTCTTGACCTCCGATCCGTCG 60
Query 61 ---CCATTACCTCCGGCGAATCTCAGCCTCGAGACTACTCTCCCGAAGCGTTTACATGCT 117
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACCATTACTTCCGGCGAATCTCAGCCTCGAGACTACTCTCCCGAAGCGTTTACATGCT 120
Query 118 GTGCTGAATGGAACCAACGAGCCCTGGACTTACGCCATTTTCTGGAAACCGTCATACGAC 177
||| ||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 121 GTGTTGAATGGAACCCACGAGCCCTGGAGTTACGCCATTTTCTGGAAACCGTCGTACGA- 179
Query 178 TATGACATTTCCGGTGAATCAGTACTCAAATGGGGCGACGGAGTTTACAATGGCGGCGAC 237
| ||| ||||||||||| |||| ||||||||||||||||||||||||| ||| ||| ||
Sbjct 180 T--GACTTTTCCGGTGAAGCAGTTCTCAAATGGGGCGACGGAGTTTACACTGGTGGCAAC 237
Query 238 GAGGAAAAGACACGAGAGAGGTTGAGGAGGAAGAAGACGATTCCGTTGTCTCCGGCGGAG 297
|||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||
Sbjct 238 GAGGAAAAGACACGAGGGAGGTTGAGGAGGAAGAAGACGATTCTGTCGTCTCCGGAGGAG 297
Query 298 AGAGAGCGTCGGAGTAATGTTCTCCGGGAACTTAACTCGATGATCTCCGGCGAAGC-TTC 356
| ||||||||||||||||||| | ||||| ||||||| |||||||||||||||||| ||
Sbjct 298 AAAGAGCGTCGGAGTAATGTTATTCGGGAGCTTAACTTGATGATCTCCGGCGAAGCGTTT 357
Query 357 CCCGGTGGTTGAAGACGAATATGTCAATAAGGATGATGACGTGGAAGCAGAAGTGACTGA 416
|| ||||||||||||||| |||| | | || ||||||||||||| |||| ||
Sbjct 358 CC-GGTGGTTGAAGACGAC---GTCAGTGATGACGATGACGTGGAAG------TGACGGA 407
Query 417 TATGGAGTGGTTTTTCTTGGTTTCCATGACGTGGAGTTTTGGTAGCGGATCCGGGTTAGC 476
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 408 TATGGAGTGGTTCTTCTTGGTTTCCATGACGTGGAGTTTTGGTAACGGATCCGGGTTAGC 467
Query 477 GGGTAAGGCGTTTGCTAGTTATAACCCGGTTTGGGTTACCGGGTCGGATCAGATTTACGG 536
|||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 468 GGGTAAGGCGTTTGCTAGCTATAACCCGGTTTTGGTTACCGGTTCGGATCTGATTTACGG 527
Query 537 ATCGGGTTGTGAACGGGCTAAACAAGGAGGTGATTTAGGGTTACAAACCAT-TGTGTGTA 595
||||||||||| ||||||||||||||||| ||| |||||||||| ||||| | ||||||
Sbjct 528 GTCGGGTTGTGATCGGGCTAAACAAGGAGGGGATGTAGGGTTACAGACCATCT-TGTGTA 586
Query 596 TTCCTTCGGATAATGGAGTGTTGGAGCTTGGATCCACGGAGCATATCCAACAAAACTCGG 655
||||||| |||| |||||||||||||||| |||||||||| | |||| || ||| ||||
Sbjct 587 TTCCTTCACATAACGGAGTGTTGGAGCTTGCATCCACGGAGGAGATCCGACCAAATTCGG 646
Query 656 ATCTTTTTAATAAGATCCGGTTCCTTTTTAATTTTGAAGGATCCAAAGATTTTTCCGGAG 715
|||||||||||| ||||||||| |||||| || ||||||||| ||||||| ||||
Sbjct 647 ATCTTTTTAATAGGATCCGGTTTCTTTTTG-----GA-GGATCCAAATATTTTTCTGGAG 700
Query 716 CCCCGAATTTGAACTCGGAGCTTTTCTCATTCCAGTTAGAGA-CTGGTTATTCAAGTACC 774
||||||||| |||||||||||||||| |||| |||||||||| | | || |||||||||
Sbjct 701 CCCCGAATTCGAACTCGGAGCTTTTCCCATTTCAGTTAGAGAGCAG-TTGTTCAAGTACT 759
Query 775 GTAACCGATAACCCGAATCCGAGT----T--AT--A-A-------T-T--T--GAATTTC 813
||||||| |||||||||||| ||| | || | | | | | ||| |||
Sbjct 760 GTAACCGGTAACCCGAATCCTAGTCCGGTTTATCTACAGAACCGGTATAATTTGAACTTC 819
Query 814 TCGACGTCGTCTTCAACATCGGCGATAGCTAGTTGCGGCGATGTACTGAGTTTTGGCGAC 873
|||||||| ||||| |||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 820 TCGACGTCATCTTCCACATTGGCGAGAGCTCCATGCGGCGATGTACTGAGTTTTGGCGAG 879
Query 874 AATGTTAAACAGAGTTCTGAAAATCTGAACCCTAATACTTATTCTGATCAGATCCAAAAC 933
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 880 AATGTTAAACAGAGTTTTGAAAATCGGAACCCTAATACTTATTCTGATCAGATTCAAAAC 939
Query 934 G-CG------ACG-G----TGATGCCGGAGAAGAAGCAGGGAAAAAAGCGCGGGAGAAAA 981
| || ||| | |||||| |||||||||| |||||||||||||||||||||||
Sbjct 940 GTCGTCCCTCACGCGACGGTGATGCTGGAGAAGAAGAAGGGAAAAAAGCGCGGGAGAAAA 999
Query 982 CCGGCGCATGGTAGAGATCA-GCCGTTGAACCACGTGGAAGCAGAGAGAATGAGACGTGA 1040
||||||||||||||||| || ||| ||||||||||||||||||||||| |||||||||||
Sbjct 1000 CCGGCGCATGGTAGAGA-CAAGCCTTTGAACCACGTGGAAGCAGAGAGGATGAGACGTGA 1058
Query 1041 GAAGCTAAACCACAGATTCTACGCGTTACGAGCGGTTGTACCAAACGTATCGAAAATGGA 1100
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1059 GAAGCTAAACCACAGATTCTACGCATTACGAGCGGTTGTACCAAACGTATCGAAAATGGA 1118
Query 1101 CAAAACGTCGTTGCTCGAAGACGCGGTTCGTTACATAAACGAACTGAAATCAAAAGCTGA 1160
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1119 CAAAACGTCGTTGCTCGAAGACGCGGTTTGTTACATAAACGAGCTGAAATCAAAAGCTGA 1178
Query 1161 AAACGCCGAATCGGAGAAAAACGCGATTCAGATTCAGCTGAATGGACTTAAAGAGATGGC 1220
||||| |||| ||||||| | |||||| |||||||| | |||| ||| || ||||| ||
Sbjct 1179 AAACGTTGAATTGGAGAAACATGCGATTGAGATTCAGTTCAATGAACTCAAGGAGATTGC 1238
Query 1221 AGGACAACGAAACGCGATTCATAGCGTTTGTAAATACGAGGAAAACGCGTCAGAGATGAC 1280
||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||
Sbjct 1239 AGGACAACGAAACGCAATTCCTAGCGTTTGTAAATACGAGGAAAAGGCATCAGAGATGAT 1298
Query 1281 GA---TCGAAGTGAAGATTATGGGAAGTGATGC-G-A-TGGTTAGAGTGGAATCGAGTAA 1334
|| |||||||||||||||||| |||||||| | | |||||||||| ||||| || ||
Sbjct 1299 GAAGATCGAAGTGAAGATTATGGAAAGTGATGATGCAATGGTTAGAGTTGAATCAAGGAA 1358
Query 1335 G-AGTGATCATCCAGGAGCGAGATTGATGAATGCTTTGATGGATTTGGAGTTAGAAGTGA 1393
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GGA-TCATCATCCAGGAGCGAGATTGATGAATGCTTTGATGGATTTGGAGTTAGAAGTGA 1417
Query 1394 ATAACGCGAGC-TTGTCTGTGATGAATGATTTTATGATACAACAAGCGAACGTGAAGATG 1452
|| | |||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1418 ATCATGCGAGCATT-TCTGTGATGAACGATCTTATGATACAACAAGCGAACGTGAAGATG 1476
Query 1453 GGGTTGAGAATCTACAAGCAAGAAGAGCTTAGGGATGTGTTGATATCGAAAATTAGCTGA 1512
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1477 GGGTTGAGAATCTACAAGCAGGAAGAGCTTAGGGATTTGTTGATGTCGAAAATTAGCTGA 1536
> AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1
| Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11798810-11800988 REVERSE LENGTH=2179
Length=2179
Score = 154 bits (83), Expect = 2e-36
Identities = 160/197 (81%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 963 AAA-AAAGCGCGGGAGAAAACCGGCGCATGGTAGAGATCAGCCGTTGAACCACGTGGAAG 1021
||| ||| || || ||||| || || | |||||||| |||| | |||||||| ||||
Sbjct 1383 AAAGAAA-CGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTAAACCACGTCGAAG 1441
Query 1022 CAGAGAGA-ATGAGACGTGAGAAGCTAAACCACAGATTCTACGCGTTACGAGCGGTTGTA 1080
|||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1442 CAGAGAGACA-AAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTACGAGCGGTTGTA 1500
Query 1081 CCAAACGTATCGAAAATGGACAAAACGTCGTTGCTCGAAGACGCGGTTCG-TTACATAAA 1139
|||||||| || |||||||| ||| | ||||| |||| ||||| | || |||||| ||
Sbjct 1501 CCAAACGTTTCAAAAATGGATAAAGCTTCGTTACTCGGTGACGCAAT-CGCTTACATCAA 1559
Query 1140 CGAACTGAAATCAAAAG 1156
||| || ||||| ||||
Sbjct 1560 CGAGCTTAAATCCAAAG 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5