BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915411
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing pr... 1760 0.0
> AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr5:18884309-18886939 REVERSE LENGTH=1743
Length=1743
Score = 1760 bits (953), Expect = 0.0
Identities = 1332/1506 (88%), Gaps = 62/1506 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGCAATACCCAA-ACTTAGGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 59
|||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 ATGGTTGCGATACCCAATA-TTAAGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 187
Query 60 CCAAACGTT-TCCTGGTAGTTCAAAGAAAATTGAGCA--T--T--C-----ACTT-GGTG 106
||||||||| | ||| |||||| |||||||||||||| | | | | || |
Sbjct 188 CCAAACGTTGT-CTGATAGTTCGAAGAAAATTGAGCATGTAGTGACTGAAGATTTATCTC 246
Query 107 AA------GAGCAATCGAAGAAGC---GTGGACCTGAAGAGCTAGAGGATGTTCAAGCTA 157
|| ||| |||| ||||||| |||| ||| |||||||||| || |||||| |||
Sbjct 247 AATCCTCGGAGAAATCAAAGAAGCGTGGTGGGCCTAAAGAGCTAGATGAAGTTCAACCTA 306
Query 158 AGAAGAAGCAGAAGCTAGATTGTGATTGGTCTAGTCAGTGTTTGGCATTGTTACGTTTTT 217
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 307 AGAAGAAGCAGAGGCTGGATTGTGATTGGTCTAGTCAATGTTTGGCATTGTTACGTTTTT 366
Query 218 TGATGGAGCACCGTGTTGGTTGGCTCTTTGAA-GAGCCTGTGGATCCTGTTAAATTGGAG 276
||||||||||||||| ||| ||||||||| || |||||||| |||||||||||| |||||
Sbjct 367 TGATGGAGCACCGTGGTGGATGGCTCTTT-AAGGAGCCTGTTGATCCTGTTAAAATGGAG 425
Query 277 ATTCCTGATTACTTCTCTGTCATACGAAAGCCAATGGATTTAGGCACTGTCAAATCAAAA 336
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 426 ATTCCTGATTACTTCAATGTCATACAAAAGCCAATGGATTTAGGCACTGTCAAATCGAAA 485
Query 337 CTTTTGAAGAATGTGTATAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 396
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CTTTTGAAGAATGTCTACAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 545
Query 397 GCCAATGCGATGCGGTATAATCCTCCG-GGCAATGAGGTTCACACGATTGCAAAGGAGAT 455
||||||||||||| |||||||||| | || |||||||||||||||||||||||||||||
Sbjct 546 GCCAATGCGATGCATTATAATCCTCTGTGG-AATGAGGTTCACACGATTGCAAAGGAGAT 604
Query 456 TAAGGAGATTTTTGAGGTTAGATGGAAATTACTCAAGAAGAAAATGGTTTCGAAATTGTC 515
||| ||||||||||||||||||||| ||| ||||| |||||||| ||||| || || ||
Sbjct 605 TAATGAGATTTTTGAGGTTAGATGGGAATCACTCATGAAGAAAAAGGTTTTGAGGTTATC 664
Query 516 CGGGGTTGAAGTTACAGAAGGTTCTAAGAGGCAGCCTGTTG-A-GTTCGATTGTTCCAGA 573
| || |||||||| |||||||| |||||| ||||| |||| | | | |||||||| |||
Sbjct 665 CTGGAATGAAGTTAGAGAAGGTTATAAGAGACAGCCAGTTGAACG-T-GATTGTTCTAGA 722
Query 574 CAGAGCAGCCCTGGAACATCAGCTTGCTCTGGGGTTTTCTCCGCGGGATCGACAAAACCA 633
| ||||||| ||||||||||||||| |||||||| | ||||| ||| ||||||
Sbjct 723 CGGAGCAGCACTGGAACATCAGCTTCCTCTGGGG-----T----GGGATTGACGAAACCA 773
Query 634 GCAAAAGAAAACTCC-------G--CTCTTTCGTCAAAGCCAGTGAAAGCGCAGAGCAAA 684
|| ||||| |||||| | |||||||||| ||||||||||||| ||||||||||
Sbjct 774 GCTAAAGAGAACTCCGAAAAGGGTTCTCTTTCGTCCAAGCCAGTGAAAGTGCAGAGCAAA 833
Query 685 AAGGATACTCCTGCTGTGACGCCGAAAGCATTATGTAAATGTGGTTCATGTGGTAGGATT 744
||| ||||||||||||||||||| ||||||||| | || | || ||||||||||||
Sbjct 834 AAGAATACTCCTGCTGTGACGCCTAAAGCATTA-G-CAACCT-GTAAATGTGGTAGGATA 890
Query 745 ATTTGCATATGCCTCAAGTCCTGTAGCTCATCTGGAAGTGAAGTTTCTTCATTAACGGAT 804
||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||
Sbjct 891 ATTTGCATATGCCTCAAGTCCTGTAGCTCATTTGGAAGTGACGTTTGTTCGTTAACGGAT 950
Query 805 TGTCAAGTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTCAGATCCTCAATCCAATGGG 864
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 951 TGTCAATTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTTAGATCCTCAATCTAATGGG 1010
Query 865 TCTGTGACTTCAAAGAATGAGAGAAATGGTAGTGTCAATTCTCAGCTTGATAAACCTTCA 924
|||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1011 TCTGACACTTCAAAGAAGGAGAGAAATGGTAGTCTCAAGTCTCAGCTTGATAAACCTTCA 1070
Query 925 AACAATGCTCTGTTGGATAATGAGTTGAAAACAACTTTTCCTGCTCTGCCGCCGGTACCT 984
|||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1071 AACAGTGATCTGTTGGGTAATGAGTTGAAAACGGCTTTTCCTGCTCTGCCGCCGGTACCT 1130
Query 985 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAGAGA-CCATTC-TAA 1042
|||||||||||||||||||||||||||||||||||||||||||||| || |||| | |||
Sbjct 1131 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAG-GAACCAT-CATAA 1188
Query 1043 AAGCTAAACACAGAGTAGTCCTTGACCAGAATAACAAAGCTGATCTAATTAGACTACAGA 1102
|||||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1189 AAGCTAAACACAGAATAGTCCTTGGCCAGAATAACAAAGCTGATCTGATTAGAATACAGA 1248
Query 1103 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1308
Query 1163 TGAGCGCTGCTAAGGTAGCTGCCCGAATGAGGGCACAAGCCGAGTTGAAACAAAAACGTG 1222
|||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||
Sbjct 1309 TGAGAGCTGCTAAGGTTGCTGAACGAATGAGGGCACAAGACGAGTTGAAACAGAAACGTG 1368
Query 1223 AGACACAACGGCTTGAACTAGCAAAGATGAAAAAAGGCTTCGATTTTGAACAGAACAACC 1282
||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1369 AGAGTCAACGGCTTGAAATAGCAAAGATGAAAAAAGGCTTCGATTTTGAACGGAACAACC 1428
Query 1283 ACTTGAAATTGGAGAAAGATTTCGTTGAAGTCTGTGGATGCTCTAGTCTGACAAGAGCTC 1342
||| ||||||| ||||| | |||||| |||||||||| |||| ||||||||||| |||||
Sbjct 1429 ACTCGAAATTGAAGAAAAAATTCGTTAAAGTCTGTGGCTGCTTTAGTCTGACAAAAGCTC 1488
Query 1343 GGTTGTTACTAAGA-GAGTTGGGTCTGGTTTT-AAGAAGTGATGATCGTCCGGAACTGGA 1400
|||||||||| || ||||||||||||||||| || || |||| || |||||||||||||
Sbjct 1489 GGTTGTTACTT-GAAGAGTTGGGTCTGGTTTTGAAAAA-TGATTATTGTCCGGAACTGGA 1546
Query 1401 AGAGATCGGGTCAGAAAATTTTGATGCAATGAGAATCGAGGATCTTGAGGAAGGAGAGAT 1460
|| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1547 AGTGATCGGGTCAGAAAAATTTGATGCAATGAGAATGGACGATCTTGAGGAAGGAGAGAT 1606
Query 1461 CCTTTA 1466
||||||
Sbjct 1607 CCTTTA 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5