BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915411 Length=1467 Score E Sequences producing significant alignments: (Bits) Value AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing pr... 1760 0.0 > AT5G46550.1 | Symbols: | DNA-binding bromodomain-containing protein | chr5:18884309-18886939 REVERSE LENGTH=1743 Length=1743 Score = 1760 bits (953), Expect = 0.0 Identities = 1332/1506 (88%), Gaps = 62/1506 (4%) Strand=Plus/Plus Query 1 ATGGTTGCAATACCCAA-ACTTAGGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 59 |||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||| Sbjct 129 ATGGTTGCGATACCCAATA-TTAAGATAAAGTTTGGTCCTCAAGGTTCTGTCAGAACATT 187 Query 60 CCAAACGTT-TCCTGGTAGTTCAAAGAAAATTGAGCA--T--T--C-----ACTT-GGTG 106 ||||||||| | ||| |||||| |||||||||||||| | | | | || | Sbjct 188 CCAAACGTTGT-CTGATAGTTCGAAGAAAATTGAGCATGTAGTGACTGAAGATTTATCTC 246 Query 107 AA------GAGCAATCGAAGAAGC---GTGGACCTGAAGAGCTAGAGGATGTTCAAGCTA 157 || ||| |||| ||||||| |||| ||| |||||||||| || |||||| ||| Sbjct 247 AATCCTCGGAGAAATCAAAGAAGCGTGGTGGGCCTAAAGAGCTAGATGAAGTTCAACCTA 306 Query 158 AGAAGAAGCAGAAGCTAGATTGTGATTGGTCTAGTCAGTGTTTGGCATTGTTACGTTTTT 217 |||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 307 AGAAGAAGCAGAGGCTGGATTGTGATTGGTCTAGTCAATGTTTGGCATTGTTACGTTTTT 366 Query 218 TGATGGAGCACCGTGTTGGTTGGCTCTTTGAA-GAGCCTGTGGATCCTGTTAAATTGGAG 276 ||||||||||||||| ||| ||||||||| || |||||||| |||||||||||| ||||| Sbjct 367 TGATGGAGCACCGTGGTGGATGGCTCTTT-AAGGAGCCTGTTGATCCTGTTAAAATGGAG 425 Query 277 ATTCCTGATTACTTCTCTGTCATACGAAAGCCAATGGATTTAGGCACTGTCAAATCAAAA 336 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| Sbjct 426 ATTCCTGATTACTTCAATGTCATACAAAAGCCAATGGATTTAGGCACTGTCAAATCGAAA 485 Query 337 CTTTTGAAGAATGTGTATAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 396 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 486 CTTTTGAAGAATGTCTACAGTAATGCTGATGAGTTTGCAGCGGATGTTCGGTTAACTTTT 545 Query 397 GCCAATGCGATGCGGTATAATCCTCCG-GGCAATGAGGTTCACACGATTGCAAAGGAGAT 455 ||||||||||||| |||||||||| | || ||||||||||||||||||||||||||||| Sbjct 546 GCCAATGCGATGCATTATAATCCTCTGTGG-AATGAGGTTCACACGATTGCAAAGGAGAT 604 Query 456 TAAGGAGATTTTTGAGGTTAGATGGAAATTACTCAAGAAGAAAATGGTTTCGAAATTGTC 515 ||| ||||||||||||||||||||| ||| ||||| |||||||| ||||| || || || Sbjct 605 TAATGAGATTTTTGAGGTTAGATGGGAATCACTCATGAAGAAAAAGGTTTTGAGGTTATC 664 Query 516 CGGGGTTGAAGTTACAGAAGGTTCTAAGAGGCAGCCTGTTG-A-GTTCGATTGTTCCAGA 573 | || |||||||| |||||||| |||||| ||||| |||| | | | |||||||| ||| Sbjct 665 CTGGAATGAAGTTAGAGAAGGTTATAAGAGACAGCCAGTTGAACG-T-GATTGTTCTAGA 722 Query 574 CAGAGCAGCCCTGGAACATCAGCTTGCTCTGGGGTTTTCTCCGCGGGATCGACAAAACCA 633 | ||||||| ||||||||||||||| |||||||| | ||||| ||| |||||| Sbjct 723 CGGAGCAGCACTGGAACATCAGCTTCCTCTGGGG-----T----GGGATTGACGAAACCA 773 Query 634 GCAAAAGAAAACTCC-------G--CTCTTTCGTCAAAGCCAGTGAAAGCGCAGAGCAAA 684 || ||||| |||||| | |||||||||| ||||||||||||| |||||||||| Sbjct 774 GCTAAAGAGAACTCCGAAAAGGGTTCTCTTTCGTCCAAGCCAGTGAAAGTGCAGAGCAAA 833 Query 685 AAGGATACTCCTGCTGTGACGCCGAAAGCATTATGTAAATGTGGTTCATGTGGTAGGATT 744 ||| ||||||||||||||||||| ||||||||| | || | || |||||||||||| Sbjct 834 AAGAATACTCCTGCTGTGACGCCTAAAGCATTA-G-CAACCT-GTAAATGTGGTAGGATA 890 Query 745 ATTTGCATATGCCTCAAGTCCTGTAGCTCATCTGGAAGTGAAGTTTCTTCATTAACGGAT 804 ||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||| Sbjct 891 ATTTGCATATGCCTCAAGTCCTGTAGCTCATTTGGAAGTGACGTTTGTTCGTTAACGGAT 950 Query 805 TGTCAAGTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTCAGATCCTCAATCCAATGGG 864 |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 951 TGTCAATTAAAGAACATTTCAGGTGCACAAGCGAGCGAGTTAGATCCTCAATCTAATGGG 1010 Query 865 TCTGTGACTTCAAAGAATGAGAGAAATGGTAGTGTCAATTCTCAGCTTGATAAACCTTCA 924 |||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1011 TCTGACACTTCAAAGAAGGAGAGAAATGGTAGTCTCAAGTCTCAGCTTGATAAACCTTCA 1070 Query 925 AACAATGCTCTGTTGGATAATGAGTTGAAAACAACTTTTCCTGCTCTGCCGCCGGTACCT 984 |||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1071 AACAGTGATCTGTTGGGTAATGAGTTGAAAACGGCTTTTCCTGCTCTGCCGCCGGTACCT 1130 Query 985 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAGAGA-CCATTC-TAA 1042 |||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||| Sbjct 1131 CCTGAGAAAGCTCTTCGTGCTGCAATACTCAAAGCTCAATATGCAG-GAACCAT-CATAA 1188 Query 1043 AAGCTAAACACAGAGTAGTCCTTGACCAGAATAACAAAGCTGATCTAATTAGACTACAGA 1102 |||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||| Sbjct 1189 AAGCTAAACACAGAATAGTCCTTGGCCAGAATAACAAAGCTGATCTGATTAGAATACAGA 1248 Query 1103 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 TAGAAAAGGAACAGATGGAAAGAGCACAACGTGAAGAGAAAGCTAGAATTGAAGCCGAGA 1308 Query 1163 TGAGCGCTGCTAAGGTAGCTGCCCGAATGAGGGCACAAGCCGAGTTGAAACAAAAACGTG 1222 |||| ||||||||||| |||| |||||||||||||||| |||||||||||| ||||||| Sbjct 1309 TGAGAGCTGCTAAGGTTGCTGAACGAATGAGGGCACAAGACGAGTTGAAACAGAAACGTG 1368 Query 1223 AGACACAACGGCTTGAACTAGCAAAGATGAAAAAAGGCTTCGATTTTGAACAGAACAACC 1282 ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1369 AGAGTCAACGGCTTGAAATAGCAAAGATGAAAAAAGGCTTCGATTTTGAACGGAACAACC 1428 Query 1283 ACTTGAAATTGGAGAAAGATTTCGTTGAAGTCTGTGGATGCTCTAGTCTGACAAGAGCTC 1342 ||| ||||||| ||||| | |||||| |||||||||| |||| ||||||||||| ||||| Sbjct 1429 ACTCGAAATTGAAGAAAAAATTCGTTAAAGTCTGTGGCTGCTTTAGTCTGACAAAAGCTC 1488 Query 1343 GGTTGTTACTAAGA-GAGTTGGGTCTGGTTTT-AAGAAGTGATGATCGTCCGGAACTGGA 1400 |||||||||| || ||||||||||||||||| || || |||| || ||||||||||||| Sbjct 1489 GGTTGTTACTT-GAAGAGTTGGGTCTGGTTTTGAAAAA-TGATTATTGTCCGGAACTGGA 1546 Query 1401 AGAGATCGGGTCAGAAAATTTTGATGCAATGAGAATCGAGGATCTTGAGGAAGGAGAGAT 1460 || ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 1547 AGTGATCGGGTCAGAAAAATTTGATGCAATGAGAATGGACGATCTTGAGGAAGGAGAGAT 1606 Query 1461 CCTTTA 1466 |||||| Sbjct 1607 CCTTTA 1612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72338985345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5