BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915413
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34690.1 | Symbols: ACD11 | Glycolipid transfer protein (GLT... 220 9e-57
> AT2G34690.1 | Symbols: ACD11 | Glycolipid transfer protein (GLTP)
family protein | chr2:14630307-14632061 FORWARD LENGTH=1021
Length=1021
Score = 220 bits (119), Expect = 9e-57
Identities = 447/601 (74%), Gaps = 40/601 (7%)
Strand=Plus/Plus
Query 20 CAGACGCTTTCAAGGAATTGGCGGTCATCGTGAGTTCACCGAGTCCGGACGTGT-CTGTT 78
||| ||||||||| || | || ||||||||| |||||||| |||||| || | ||| |
Sbjct 159 CAGCCGCTTTCAAAAAACTAGCAATCATCGTGAATTCACCGAATCCGGAAGT-TCCTG-T 216
Query 79 AA-GCAGTTCGCTAACGCTTGTTCTCTCTTCTCGAAC-CTATTTGG-TGTCCTTGAAATA 135
|| ||| ||| || ||||||| ||||| ||||| | || ||||| || ||||| ||||
Sbjct 217 AACGCAATTCTCTCACGCTTGCTCTCTGGTCTCG-CCTCTCTTTGGTTG-CCTTGGAATA 274
Query 136 GCCTTCAAGTTTGTCAAGACA--GACTACGTTGCCAAGGTTAATGATCTTGCCAAGGCAT 193
|| || ||||||| | || | ||||| |||||||||||| ||||||||| | ||| |
Sbjct 275 GCTTTTAAGTTTG-C-GGAAATGGACTATGTTGCCAAGGTTGATGATCTTGTGAGGGCGT 332
Query 194 CGAGCTCAATATCGACATTAGAGGTAATGGTTGACGAAGATATCAAGGCAGGCCGCGCaa 253
|||| || ||||||||||||| ||||||| | ||| ||||||| |||||| | | ||
Sbjct 333 CGAGTTCGATATCGACATTAGTGGTAATGATGGACAAAGATATTGAGGCAGATTGTGTAA 392
Query 254 aaaaaCCTGGTAGTCATACAAGAAACCTTTTAAAAACAAAGCGTGGTCTTGAAATGATCA 313
||| ||||||||||||| ||||||||||| | |||||||||||||| ||| |||
Sbjct 393 GGAAAGCTGGTAGTCATACGAGAAACCTTTTGAGGGTTAAGCGTGGTCTTGACATGGTCA 452
Query 314 GGGTTCTATTCGAAGAGATAATAGCAACC-AACGCTA-ATAGCTCCCTAAAGGATGCAGC 371
||||| || ||| |||| ||||| || || | | ||| |||| | |||||| ||||
Sbjct 453 AAGTTCTCTTTGAACAGATCATAGCTTCCGAA-G-GAGATAACTCCTTGAAGGATCCAGC 510
Query 372 GTAC-AAGGCTTACAATAAAGTGTTAGCTAAGCACCATGGGCT-TGCTCTTCAGG-AATC 428
|| ||| |||| | ||||||| ||| |||||| || | ||| | | || || |
Sbjct 511 -AACTAAGTCTTATGCTCAAGTGTTTGCTCCCCACCAT-GGATGGGCTATAC-GGAAAGC 567
Query 429 TGCTGAGAC-AGGAATGGAAT-CTCTCCCCTCAAGGGGACTGGTACTGT-GCATGATCAA 485
|| | | || || | || |||| ||| |||||| | |||| | ||| ||||
Sbjct 568 TG-TTTCTCTTGGGAT-GTATGCTCTTCCCACAAGGGCTCACCTACT-TAATATGCTCAA 624
Query 486 TGAAACA-GAGGAGTCGGCTAAGATACATATGCAAAGCTATGTTACTGCATCGATACCAG 544
| | | |||| | |||||||||||||||||||||||||||| | | ||||| ||||
Sbjct 625 AG-AGGATGAGGCGGCGGCTAAGATACATATGCAAAGCTATGTCAATTCATCGGCACCAT 683
Query 545 TAACTGCA--TATGTTGATCAA-CTCTTA-TGCTCCAAG-AACCTTGGTATTGATTGGTG 599
||| | || ||| ||||| || || || | ||||||| ||| | ||||||||||||||
Sbjct 684 TAA-T-CACGTATCTTGAT-AATCTATTCCT-CTCCAAGCAAC-TCGGTATTGATTGGTG 738
Query 600 A 600
|
Sbjct 739 A 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5