BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915414
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prot... 381 4e-105
> AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein
interaction domain protein family | chr1:11612118-11616218
FORWARD LENGTH=2582
Length=2582
Score = 381 bits (206), Expect = 4e-105
Identities = 242/260 (93%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 154 TGTGATGGTGACAAAAACGGAGTTCGTTACATGGTTTTATGTCGTGTAATAATGGGGAAT 213
||||||| |||| |||||||||| ||||||||||||||||| ||||| || |||||||||
Sbjct 1623 TGTGATGTTGACGAAAACGGAGTACGTTACATGGTTTTATGCCGTGTGATTATGGGGAAT 1682
Query 214 ATGGAGCTCCTTCGTGGTGATAAAGCTCAATTCTTTTATGGTGGAGAAGAATATGACAAT 273
|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1683 ATGGAGCTTCTTCGTGGTGATAAAGCTCAGTTCTTTTCTGGTGGAGAAGAATATGACAAT 1742
Query 274 GGAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACGTCAATATGAACACT 333
||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1743 GGAGTCGATGACATTGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATATGAACACA 1802
Query 334 CATATATTCCCCGAATTTGTTCTTATGTTCAAGCTGTCTAATCTCTCCAATACTGAAGGT 393
||||||||||| ||||||||| ||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1803 CATATATTCCCGGAATTTGTTGTTAGGTTCAAGCTGTCTAATCTCCCCAATGCTGAAGGT 1862
Query 394 AATTTGATTGCTAAGCGTGA 413
||||||||||||||||||||
Sbjct 1863 AATTTGATTGCTAAGCGTGA 1882
Score = 178 bits (96), Expect = 5e-44
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 33 TGGTGGAGCATTTATTAGAAAGTCCATCTATGGTGTTGGGATCCATTTAACTGCTGCAGA 92
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1538 TGGTGGAGCATTTATCAGAAAGTCCATCTATGGTGTTGGGATCCATTTAACCGCTGCAGA 1597
Query 93 CTGCCCTTACTTCAGTGCTAGATATTGTGATGTTGACAAAAACAGAGCACGTTACAT 149
||||||||| |||||||||||||| |||||||||||| ||||| ||| |||||||||
Sbjct 1598 CTGCCCTTATTTCAGTGCTAGATACTGTGATGTTGACGAAAACGGAGTACGTTACAT 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5