BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915419

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20590.1 | Symbols:  | Reticulon family protein | chr2:88671...   161    6e-39


> AT2G20590.1 | Symbols:  | Reticulon family protein | chr2:8867117-8869228 
REVERSE LENGTH=1484
Length=1484

 Score =  161 bits (87),  Expect = 6e-39
 Identities = 95/99 (96%), Gaps = 0/99 (0%)
 Strand=Plus/Minus

Query  424   GTCAAGTTCCAAAACGTTGTCACCGCAGAGCCGGCCAAGATCTTCTTGTGTGAGCAGACT  483
             |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1120  GTCAAGTTCCAAAACGCTGTCACCGCAGAGCCAGCCAAGATCTTCTTGTGTGAGCAGACT  1061

Query  484   CCCCATGCTTCACCTATTCTTGTTTTCATTCTTTCAACT  522
             |||||||||||||||||||| ||||||| ||||||||||
Sbjct  1060  CCCCATGCTTCACCTATTCTCGTTTTCACTCTTTCAACT  1022



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5