BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915427
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 953 0.0
> AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18835618-18839546 FORWARD LENGTH=3372
Length=3372
Score = 953 bits (516), Expect = 0.0
Identities = 1256/1602 (78%), Gaps = 95/1602 (6%)
Strand=Plus/Plus
Query 16 TCTTCTTACAATTGGGT-ATATGATGTTTTCCCGAGCTTCAGTGGGGAAGATGTCCGCCT 74
|||||| ||||| ||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 19 TCTTCTCGCAATT-GGTCATATGATGTTTTCCCAAGCTTCAGTGGAGAAGATGTCCGCAA 77
Query 75 AACTTTCCTCAGCCACTTGCTCAAAGAGCTTGATCGTAAAAT-GATCATTGCTTTCAAAG 133
||| |||||||||||||| |||| ||||| || || |||| ||||||| |||||||||
Sbjct 78 AACATTCCTCAGCCACTTTCTCAGGGAGCTGGAACG-GAAATCGATCATTACTTTCAAAG 136
Query 134 ACAACGAGATCCCGAGAGGCCAGTCGCTCGATCCTGAGCTTAAACAGGCGATTCGGGATT 193
|||| ||||| |||| ||||||| | | || |||||| | |||||||| ||||
Sbjct 137 ACAATGAGATGGAGAGAAGCCAGTCAATAGCCCCAGAGCTTGTAGAGGCGATTAAAGATT 196
Query 194 CTAGGATCGCAGTCG-TCGTGTTCTCGAAAAATTACGCCTCTTCGA-CTTGGTGCCTTAA 251
| ||||| ||||| | | |||||||| ||||| ||||||||||| | | ||||| || ||
Sbjct 197 CAAGGATTGCAGT-GATTGTGTTCTCTAAAAACTACGCCTCTTCAAGC-TGGTGTCTAAA 254
Query 252 CGAGTTGCTGGAGATCGTGCAATACAAGGAAGAGTTT-GGTC-GTCAAATGGTGATACCG 309
||| || | ||||| ||| || ||| || | ||| || | | | || ||||||||
Sbjct 255 TGAGCTGTTAGAGATTATGCGATGCAACAAATA-TTTGGGCCAG-C-AA--GTGATACCA 309
Query 310 GTTTTCTACGATTTGGATCCATCCCA-CGTGAGGAAACAAACCGGAGACTTTGGAAAGAT 368
|| |||||| |||||||||| || || | | ||||||| | ||||| |||||| ||
Sbjct 310 GTCTTCTACTATTTGGATCCTTCTCATC-TTCGGAAACAGTCGGGAGAGTTTGGAGAGGC 368
Query 369 ATTTCAAGAGACTTGCAAGAACAAAACAGAGGACGTGATAAATCGA-TGGAAGAAAGCGT 427
|||| || |||||||| ||||| |||| ||||| |||| ||||| | |||||| ||||||
Sbjct 369 ATTTAAAAAGACTTGCCAGAACCAAACTGAGGAAGTGAAAAATC-AGTGGAAGCAAGCGT 427
Query 428 TGACCGACGTTGCTAATATCCTCGGATATCATTCT--GTAACT-CAGGTTAACGAAGCAA 484
|||| || ||| | || |||||||||||||||||| | |||| || || |||||| |
Sbjct 428 TGACTGATGTTTCAAACATCCTCGGATATCATTCTAAG-AACTGCA--ATAGCGAAGCTA 484
Query 485 AAATGATTGAAGAAATCGCAAATGATGTTTCCGGTAAACTGCTTTTAACTACATCAAAGG 544
|||||||||||||||| | | | || ||| ||||||||| ||||||| ||||||| |
Sbjct 485 CAATGATTGAAGAAATCTCCAGTCATATTTTAGGTAAACTGAGTTTAACTCCATCAAATG 544
Query 545 ATTTTGAGGACTTTGTCGGCATCGAGGATCATATTGCA-AATATGAGCG-AATTGTTGGA 602
|||||||||| ||||| |||||| | |||||||| | | || |||| | |||||| |
Sbjct 545 ATTTTGAGGAATTTGTTGGCATCAAAGATCATATCG-AGAAGGTGAG-GTTGTTGTTGCA 602
Query 603 ACTGGAATCTGAGGAAGTGAGAATGCTTGGTATTTGGGGTTCCTCAGGG-ATTGGCAAGA 661
|||||||||| |||||||| ||| |||| || |||||| |||| ||| || || ||||
Sbjct 603 TTTGGAATCTGACGAAGTGAGGATGGTTGGGATATGGGGTACCTC-GGGAATCGGTAAGA 661
Query 662 CTACCATCGCAAGAACTCTGTTCAACCGT-ATATCTC--GACACTTCCAAGGTAGCATTT 718
||||||| |||||| || | || | || || |||| | || || ||| |||| |||
Sbjct 662 CTACCATTGCAAGAGCTTTATT-TA--GTAATCTCTCTAGTCAGTTTCAAAGTAGTGTTT 718
Query 719 TCATAGACAGGGCTTTCATATCTAAGAGTATGGAAGGTTATGGTCGAGCCAATCCGGACG 778
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 719 ACATAGACAGGGCTTTCATATCTAAGAGTATGGAAGGTTACGGTCGAGCCAATCCAGATG 778
Query 779 ACTATAACATGAAATTGCACTTGCAAGGAAATTTCCTATCT-AAACTTTTGAAG-AAAAA 836
||||||||||||| |||| |||| || ||||||||| | | ||| ||||| | |||||
Sbjct 779 ACTATAACATGAAGTTGCGTTTGCGAGAAAATTTCCTGTTTGAAA-TTTTGG-GCAAAAA 836
Query 837 GGACATAGAGATAAATCATTTAGGTGCATTGGAAGAGAGACT-AAGGCATCAAAAGGTTC 895
| |||| || | | || |||||| ||||||| || || ||| |||||||| ||||
Sbjct 837 GAACAT-GA-AGA--TC-----GGTGCAATGGAAGAAAGGCTGAAG-CATCAAAAAGTTC 886
Query 896 TTATCTTTATTGATGATTTAGACGATCTA-ATGGTGCTAGAAGTCTTGGCGGGTCA-AAC 953
||||| ||||||||||||| || |||| | ||| ||||||| | ||| | |||| | |||
Sbjct 887 TTATCATTATTGATGATTTGGATGATCAAGATG-TGCTAGATGCCTTAGTGGGT-AGAAC 944
Query 954 TCAATGGTTTGGATGTGGGAGCAGAATCATTGTGGTTACAACTGATAAGTATTTTCT-AA 1012
||||||||||||| ||||||| ||||| ||||||||||||| | || |||| || ||
Sbjct 945 TCAATGGTTTGGAAGTGGGAGTAGAATAATTGTGGTTACAAAAAACAAACATTT-CTTAA 1003
Query 1013 CGGCCCATGATATTGATCTTATTTACGAGGTGGGTCTCCC-TCCT-ATCAAACTAGCTCT 1070
|||||||| ||||||| | ||||||||| ||||||| || | | || || |||||
Sbjct 1004 GGGCCCATGGGATTGATCATGTTTACGAGGCCTGTCTCCCATC-TGAAGAA-CTTGCTCT 1061
Query 1071 AGAGATGTTCTGTCGATCTGCTTTCAAGCAGAAATATCCACCTGATGGTTTGATGGAG-T 1129
|||||||| ||||||| |||||||| | |||| | ||||||||||||||| |||||| |
Sbjct 1062 TGAGATGTTTTGTCGATATGCTTTCAGGAAGAATTCTCCACCTGATGGTTTTATGGAGCT 1121
Query 1130 TTGCTTCCGAAGTTGTAAACCGTGCTGGTAGTCTTCCTTTGGGTCTTAACGTTTTGGGTT 1189
|| |||| ||||||| | || ||||||| |||||||||||||||||| ||||||||||
Sbjct 1122 TT-CTTCTGAAGTTGCATTGCGCGCTGGTAATCTTCCTTTGGGTCTTAAAGTTTTGGGTT 1180
Query 1190 CGTCTTTGCGAGG-ATTGAACA-AGGATGACTGTATGAATATGCTGCCTAGGTTTCGAA- 1246
||| | | || || | || || || | ||||| ||| ||||| |||| ||| ||| ||
Sbjct 1181 CGTATCTACGGGGTAGGGA-CATAG-AGGACTGGATGGATATGATGCCGAGGCTTCAAAA 1238
Query 1247 -GAATTCTAGATGGTAAAATTGAAAAGACACTAAGAGTCAGCTATGATGGGTTAAGTAGA 1305
|| || ||||||| |||||||| |||||||||||||||||||| ||||| |||| | |
Sbjct 1239 TGA-TT-TAGATGGGAAAATTGAGAAGACACTAAGAGTCAGCTACGATGGATTAAACA-A 1295
Query 1306 GAAGAAG-ATAAAGCGATATTCCGTCACATCT-CATGTCTTTTCAATCATGTGGAAACCA 1363
|| ||| || |||| ||||| |||||||| | |||||||||||||| || | ||| |
Sbjct 1296 CAAAAAGGATGAAGCAATATTTCGTCACAT-TGCATGTCTTTTCAATGGTGAG-AAAGTA 1353
Query 1364 AA-GACATCAAACTGTTTCTTGCAGATAGTGAGTTGGATGTTAATATCGGGCTGAAAAAC 1422
|| |||||||| || |||| ||||| ||||| |||||||||||||| ||| | ||||||
Sbjct 1354 AATGACATCAAGTTGCTTCTAGCAGAGAGTGACTTGGATGTTAATATTGGGTTAAAAAAC 1413
Query 1423 CTAGTTGATAAATGC-CTCAT-TCATGAAAGATGGGG-TAA-AGTGGAGATGCACTGTTT 1478
|| |||||||| | | ||||| | || |||| | || || | || |||||||| ||||
Sbjct 1414 CTTGTTGATAAGT-CTCTCATATT-TGTAAGA-GAGGATACTATTG-AGATGCACCGTTT 1469
Query 1479 GCTAGAAGAAATGGGTA-GAAATATTGTTCGCATACAGTCCATTGACAAGCCTCAAAGA- 1536
|||| |||| ||||||| | | ||||| || |||||| | ||| |||| | ||
Sbjct 1470 GCTACAAGATATGGGTAAGGAG-ATTGTCCGTGCACAGTCAAATGA---GCCTGGA-GAA 1524
Query 1537 CGGGAATTTCTGGTGGATTCAAAAG-ATATATGTGATGTACT 1577
|||||||| || |||||||| || | |||| | ||||||||
Sbjct 1525 CGGGAATTCCTTGTGGATTCGAA-GCATATCTACGATGTACT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5