BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915450
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46250.1 | Symbols: | RNA-binding protein | chr5:18755311-1... 1812 0.0
> AT5G46250.1 | Symbols: | RNA-binding protein | chr5:18755311-18758281
FORWARD LENGTH=1571
Length=1571
Score = 1812 bits (981), Expect = 0.0
Identities = 1204/1305 (92%), Gaps = 42/1305 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCTCTTCCTCTTCGCTCCGGTGAGAAGATGGCAA-CCCCTTCCATCTCCGACGC 59
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 78 ATGTCTTCTCTTCCTCTTCGCTCCGGTGAGAAGATGG-AATCGCCTTCCATCTCCGACGC 136
Query 60 TGTTCCACTTCAGGCACCAGAAGACGCGACCGCGGATTTTTCCCAACCGCAATCGCCGTC 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CGTTCCACTTCACGCACCAGAAGACGCGACCGCGGATTTTTCCCAACCGCAATCGCCGTT 196
Query 120 ACTTGATGTTGATTCGTTACCAGTTGCTGAATCTTCTTCCGATGATGTTGTTGTTGATGT 179
|| ||| ||||||||||| |||||| ||||||| | |||||||||||||||||| | ||
Sbjct 197 ACATGAAGTTGATTCGTTTCCAGTTACTGAATC--C-TCCGATGATGTTGTTGTTAACGT 253
Query 180 CTCGGAGATACCGTCTTTATCTCCGTCGGATGATGACTTTT-ACCACGAGCGAAATAGTG 238
||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||| |
Sbjct 254 CTCGGAGATACCGAATTTATCTCCGTCTGATGATGA-TTTTGACCACGAGCGAAATAGCG 312
Query 239 GCGAGGATCGCGATCAGGATCACGGCGAGAATCTTGTTGAGACCGACGATGCTGCTGTTC 298
||||||||||||||||||||||||||||||||| ||||||||||| | || || |||||
Sbjct 313 GCGAGGATCGCGATCAGGATCACGGCGAGAATCCGGTTGAGACCGATGGTGTTGTTGTTC 372
Query 299 CAATCGATGTGTTGAAGCAGAAGATCATTAGACAGGTTGAATACTACTTTAGTGACGAGA 358
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CAATCGATGAGTTGAATCAGAAGATCATTAGACAGGTTGAATACTACTTTAGTGACGAGA 432
Query 359 ATTTGCCTACTGACAAATTTCTTCTGAATGCTATGAAGAGAAACAAAAAAGGCTTTGTTC 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 433 ATTTGCCTACTGACAAATTTCTTCTGAATGCAATGAAGAGAAACAAAAAAGGCTTTGTTC 492
Query 419 CTATTTCTACCATTGCTACGTTCCACAAAATGAAGAAGCTTACTCGAGATCATGCTTTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CTATTTCTACCATTGCTACGTTCCACAAAATGAAGAAGCTTACTCGAGATCATGCTTTGA 552
Query 479 TAGTATCAGCCTTAAAGGAGTCATCGTTTCTTGTTGTTAGCTCTGATGAGAAGAAGGTGA 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 553 TAGTATCAGCCTTAAAGGAGTCATCGTTTCTTGTTGTTAGCGCTGATGAGAAGAAGGTGA 612
Query 539 AGCGGCTGAGTCCTCTTCCTGAGGTTAGGGATCCAAAGATTTTCACTGTTTTAGTAGAAA 598
||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||
Sbjct 613 AGCGGCTGAGTCCTCTTCCTGAGATCAGAGATCCAAAGATTTTCACTGTTTTGGTAGAAA 672
Query 599 ATTTGCCAGAGGATCATTCAGACGAGAATATTCGGGAGATATTTGGTAAAGCTGGAAGCA 658
|||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 673 ATTTGCCAGAGGATCATTCAAATGAGAATATTCGAGAGATATTTGGTAAAGCTGGAAGTA 732
Query 659 TAAAAAGTGTATCCATATGTGATCCAAATGCTGCTGAAGAACCAGAGAAGGGTGCTAAGA 718
| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 733 TTAAAAGTGTATCCATATGTGATCCAAATGCTGTTGAAGAATCAGAGAAGGGTGGGAAGA 792
Query 719 AGGAAAAATTCATCAGAACCAGATTACATGCCTTTGTGGAATATGAAACGGTGGAGGCAG 778
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 793 AGGAAAATTTCATCAGAACCAGATTACATGCCTTTGTGGAGTATGAAACGGTGGAGGCAG 852
Query 779 CTGAAAAAGCGGCAGCTACATTGAATAATGAGCAAGACTGGAGAAATGGGTTGCGAGTTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CTGAAAAAGCGGCAGCTACATTGAATAATGAGCAAGACTGGAGAAATGGGTTGCGAGTTA 912
Query 839 AGCTTCTTGAACAA--A-CAGGAAAGTTTGCACAGAGAAGACCAGCTAGGAGAGAAGTCG 895
|||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 913 AGCTTCTTGAACAAGCAGCAGGAAAGTTTGCACAGAGAAGACCAGCTCGGAGGGAAGTCG 972
Query 896 ATAAAGAAAAGGATAATACAGGCCGAGTTCATGATCAAACTGAAGGAGAGAAGAACAAAA 955
||||||||||||| | ||||||| |||||||||||||||||| ||||||||| |||||||
Sbjct 973 ATAAAGAAAAGGACACTACAGGCAGAGTTCATGATCAAACTGGAGGAGAGAAAAACAAAA 1032
Query 956 AGACGCGTGAACATCAGCAA-CACCGTCACCATCATTCTGATAATACTGCTGATGATGTA 1014
|||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| |
Sbjct 1033 AGACGCGTGAACATCAA-AATCACCGTCTCCATCATTCTGATAATCCTGCTGATGATG-A 1090
Query 1015 AGTTCCATCTTAGATGGTGGCAATCATCAGAAGGATAAAAATGGAAACAAAGGCAGAGGT 1074
| | | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1091 ----C-------G--G-TGGCAATCATCAGAAGGATAAAAATGGAAACAAAGGCAGAGTT 1136
Query 1075 GGAGGACAAGGAAGGCGACAGCATCATCAAGGCGGCAGCGGTATTGGACATGGAACACCA 1134
| |||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1137 GTAGGACAAGGAAGACGACAGAATCATCAAGGCGGCAACGGCATTGGACATGGAACA--- 1193
Query 1135 CCATCAGCTTCATCATCTTCTCATCATAATTATCATCCTGTTGAGGTCTCAAAGCGTCCA 1194
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1194 ------GCTTCATCATCTTCTCATCCTAATTATCATCCTGTTGAGGTCTCAAAGCGTCCA 1247
Query 1195 CCTGGCCCGAAAATGCCTGATGGGACGAGGGGGTTCACAATGGGGCGTGGTAAAGCGATT 1254
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1248 CCTGGCCCGAGAATGCCTGATGGGACGAGAGGGTTCACAATGGGGCGTGGTAAAGCGATT 1307
Query 1255 CCTCCTCCTCCTCTCACATCTGCTCAAACCAGTCATGAAGTTTGA 1299
|||||||| | |||||| |||||||||||||||||||||||
Sbjct 1308 CCTCCTCC-C-----ACATCTACTCAAACCAGTCATGAAGTTTGA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5